Reference: Karp PD, et al. (2002) The MetaCyc Database. Nucleic Acids Res 30(1):59-61

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Abstract

MetaCyc is a metabolic-pathway database that describes 445 pathways and 1115 enzymes occurring in 158 organisms. MetaCyc is a review-level database in that a given entry in MetaCyc often integrates information from multiple literature sources. The pathways in MetaCyc were determined experimentally, and are labeled with the species in which they are known to occur based on literature references examined to date. MetaCyc contains extensive commentary and literature citations. Applications of MetaCyc include pathway analysis of genomes, metabolic engineering and biochemistry education. MetaCyc is queried using the Pathway Tools graphical user interface, which provides a wide variety of query operations and visualization tools. MetaCyc is available via the World Wide Web at http://ecocyc.org/ecocyc/metacyc.html, and is available for local installation as a binary program for the PC and the Sun workstation, and as a set of flatfiles. Contact metacyc-info@ai.sri.com for information on obtaining a local copy of MetaCyc.

Reference Type
Journal Article | Research Support, U.S. Gov't, P.H.S. | Comparative Study
Authors
Karp PD, Riley M, Paley SM, Pellegrini-Toole A
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Interaction Annotations

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Interactor Interactor Type Assay Annotation Action Modification Phenotype Source Reference

Gene Ontology Annotations

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Gene Gene Ontology Term Qualifier Aspect Method Evidence Source Assigned On Annotation Extension Reference

Phenotype Annotations

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Gene Phenotype Experiment Type Mutant Information Strain Background Chemical Details Reference

Regulation Annotations

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Regulator Target Experiment Assay Construct Conditions Strain Background Reference