Perez-Ortin JE, et al. (2012) Genome-wide studies of mRNA synthesis and degradation in eukaryotes. Biochim Biophys Acta 1819(6):604-15
Abstract: In recent years, the use of genome-wide technologies has revolutionized the study of eukaryotic transcription producing results for thousands of genes at every step of mRNA life. The statistical analyses of the results for a single condition, different conditions, different transcription stages, or even between different techniques, is outlining a totally new landscape of the eukaryotic transcription process. Although most studies have been conducted in the yeast Saccharomyces cerevisiae as a model cell, others have also focused on higher eukaryotes, which can also be comparatively analyzed. The picture which emerges is that transcription is a more variable process than initially suspected, with large differences between genes at each stage of the process, from initiation to mRNA degradation, but with striking similarities for functionally related genes, indicating that all steps are coordinately regulated. This article is part of a Special Issue entitled: Nuclear Transport and RNA Processing.
| Status: Published | Type: Journal Article | PubMed ID: 22182827 |
Topics addressed in this paper
Number of different genes curated to this paper: 31
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| Topics | Genes linked to topics (#1 - 10 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CCR4 | CDC36 | CDC39 | DCP1 | DCP2 | DST1 | LSM1 | LSM2 | LSM3 | LSM4 | |
| Non-Fungal Related Genes/Proteins | | | | | | | | | | |
| Reviews | | | | | | | | | | |
| Techniques and Reagents | | | | | | | | | | |
| Topics | Genes linked to topics (#11 - 20 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| LSM5 | LSM6 | LSM7 | MOT2 | NOT3 | NOT5 | PAT1 | POP2 | RPB10 | RPB11 | |
| Non-Fungal Related Genes/Proteins | | | | | | | | | | |
| Reviews | | | | | | | | | | |
| Techniques and Reagents | | | | | | | | | | |
| Topics | Genes linked to topics (#21 - 30 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| RPB2 | RPB3 | RPB4 | RPB5 | RPB7 | RPB8 | RPB9 | RPC10 | RPO21 | RPO26 | |
| Non-Fungal Related Genes/Proteins | | | | | | | | | | |
| Reviews | | | | | | | | | | |
| Techniques and Reagents | | | | | | | | | | |
- To find other papers on a gene and topic, click on the colored ball in the appropriate box.
- displays other papers with information about that topic for that gene.
- displays other papers in SGD that are associated with that topic.
The topic is addressed in these papers but does not describe a specific gene or chromosomal feature.
- To go to the Locus page for a gene, click on the gene name.
| Topics | Genes linked to topics (#31 ) |
|---|---|
| XRN1 | |
| Non-Fungal Related Genes/Proteins | |
| Reviews | |
| Techniques and Reagents | |




