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Venters BJ, et al.  (2011) A comprehensive genomic binding map of gene and chromatin regulatory proteins in Saccharomyces. Mol Cell 41(4):480-92

Abstract: Hundreds of different proteins regulate and implement transcription in Saccharomyces. Yet their interrelationships have not been investigated on a comprehensive scale. Here we determined the genome-wide binding locations of 200 transcription-related proteins, under normal and acute heat-shock conditions. This study distinguishes binding between distal versus proximal promoter regions as well as the 3' ends of genes for nearly all mRNA and tRNA genes. This study reveals (1) a greater diversity and specialization of regulation associated with the SAGA transcription pathway compared to the TFIID pathway, (2) new regulators enriched at tRNA genes, (3) a global co-occupancy network of >20,000 unique regulator combinations that show a high degree of regulatory interconnections among lowly expressed genes, (4) regulators of the SAGA pathway located largely distal to the core promoter and regulators of the TFIID pathway located proximally, and (5) distinct mobilization of SAGA- versus TFIID-linked regulators during acute heat shock.CI - Copyright (c) 2011 Elsevier Inc. All rights reserved.

Status: Published Type: Journal Article | Research Support, N.I.H., Extramural | Research Support, Non-U.S. Gov't PubMed ID: 21329885

Topics addressed in this paper

Number of different genes curated to this paper: 197

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Topics Topics not linked to Genes Genes linked to topics (#1 - 10 )
ACT1 ADA2 ADH1 ARP4 ARP7 ARP9 ASF1 BRE1 BRE2 BRF1
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Genomic co-immunoprecipitation study yg ball
Large-scale protein localization yg ball
Omics yg ball
Regulation of blue ball
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Topics Genes linked to topics (#11 - 20 )
BRN1 BTT1 CAF120 CAF130 CAF16 CAF4 CAF40 CCR4 CDC36 CDC39
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Regulatory Role blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#21 - 30 )
CHD1 CSE2 CYC8 DIG1 DOT1 DST1 EAF1 EAF3 EAF5 EAF6
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Regulatory Role blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
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Topics Genes linked to topics (#31 - 40 )
EAF7 EPL1 ESA1 ESS1 FKH1 FKH2 GAL11 GCN4 GCN5 GCR1
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Topics Genes linked to topics (#41 - 50 )
GLN3 HDA1 HFI1 HHO1 HO HOS1 HOS2 HOS3 HPR1 HTL1
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Regulation of blue ball
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Topics Genes linked to topics (#51 - 60 )
IFH1 IOC2 IOC4 IRR1 ISW1 ISW2 JHD1 LDB7 LEU3 MCD1
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Regulatory Role blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
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Topics Genes linked to topics (#61 - 70 )
MED1 MED11 MED2 MED4 MED6 MED7 MED8 MFT1 MOT1 MOT2
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Topics Genes linked to topics (#71 - 80 )
NGG1 NHP6A NOT3 NOT5 NPL6 NUT1 NUT2 PAF1 PCF11 PGD1
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Regulatory Role blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#81 - 90 )
PGK1 PHO5 POB3 POP2 RAD6 RAD61 RAP1 REB1 RFX1 RGR1
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Regulation of blue ball blue ball
Regulatory Role blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
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Topics Genes linked to topics (#91 - 100 )
ROX3 RPD3 RPO21 RSC1 RSC2 RSC3 RSC30 RSC4 RSC58 RSC6
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Regulatory Role blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#101 - 110 )
RSC8 RSC9 RTT102 RTT109 SDC1 SET1 SET2 SFH1 SFP1 SGF11
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Regulatory Role blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#111 - 120 )
SGF29 SGF73 SHG1 SIN4 SKN7 SMC1 SMC2 SMC3 SMC4 SNF1
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Regulatory Role blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#121 - 130 )
SNF11 SNF12 SNF2 SNF5 SNF6 SOH1 SPP1 SPT10 SPT15 SPT16
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Regulatory Role blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#131 - 140 )
SPT20 SPT21 SPT3 SPT6 SPT7 SPT8 SRB2 SRB4 SRB5 SRB6
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Regulatory Role blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#141 - 150 )
SRB7 SRB8 SSN2 SSN3 SSN8 STB1 STH1 STP1 SUA7 SUS1
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Regulatory Role blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#151 - 160 )
SWC4 SWD1 SWD2 SWD3 SWI1 SWI3 SWI4 SWI6 SWP82 SWR1
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Regulatory Role blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#161 - 170 )
TAF1 TAF10 TAF11 TAF12 TAF13 TAF14 TAF2 TAF3 TAF4 TAF5
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Regulatory Role blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#171 - 180 )
TAF6 TAF7 TAF8 TAF9 TFC3 TFC6 TFC7 TFC8 THO2 THP2
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Regulatory Role blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#181 - 190 )
TOA1 TOA2 TRA1 TUP1 UBP8 UGA3 UME6 URE2 WTM1 WTM2
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Regulatory Role blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#191 - 197 )
XBP1 YAF9 YAP6 YCG1 YCS4 YGR146C-A YNG2
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Regulation of blue ball
Regulatory Role blue ball blue ball blue ball blue ball blue ball blue ball

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