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Sharma PK, et al.  (2011) Calorie restriction up-regulates iron and copper transport genes in Saccharomyces cerevisiae. Mol Biosyst 7(2):394-402

Abstract: Calorie restriction (CR) is a non genetic intervention, known to confer longevity benefits across the various phyla from unicellular yeast to mammals. CR also invokes homeostatic responses similar to stress, however the sequence of molecular events leading to longevity is still illusive. In this study, we analysed the whole genome gene expression profile in response to CR, mutations mimicking CR, heat shock and H(2)O(2) from a gene ontology perspective. Our analysis revealed that mitochondrion is a common hub in the gene expression programme under these conditions and the electron transport chain (ETC) is a major player. Consequently the genes involved in the metal ion transport were also significantly up-regulated. We confirmed the results of the in silico analysis using quantitative real time PCR which showed up-regulation of genes involved in respiration and transport of iron and copper. The promoter activity of one of the representative genes, FET3, was also found to be higher upon calorie restriction. Altogether, our results indicate that upon calorie restriction the levels of iron and copper fall in cells, which elicits a transcriptional response up-regulating the genes involved in their uptake to maintain cellular homeostasis.

Status: Published Type: Journal Article PubMed ID: 21031176

Topics addressed in this paper

Number of different genes curated to this paper: 59

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Topics Topics not linked to Genes Genes linked to topics (#1 - 10 )
ARN1 ARN2 ATP1 ATP14 ATP15 ATP16 ATP17 ATP2 ATP3 ATP4
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Computational analysis yg ball
Omics yg ball
Regulation of blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#11 - 20 )
ATP5 ATP7 ATX1 CCC2 CCS1 COR1 COX12 COX13 COX17 COX4
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Regulation of blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#21 - 30 )
COX5A COX5B COX6 COX7 COX8 COX9 CTR1 CTR2 CTR3 CYC1
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Regulation of blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
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Topics Genes linked to topics (#31 - 40 )
CYT1 ENB1 FET3 FET4 FET5 FIT1 FRE1 FRE2 FRE6 FRE7
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Regulation of blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#41 - 50 )
FTR1 HAP4 HXK2 NDE1 NDE2 NDI1 QCR10 QCR2 QCR6 QCR7
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Mutants/Phenotypes blue ball blue ball
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Topics Genes linked to topics (#51 - 59 )
QCR8 QCR9 RIP1 SDH1 SDH2 SDH3 SDH4 SIT1 TIM11
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Regulation of blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
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