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Rintala E, et al.  (2009) Low oxygen levels as a trigger for enhancement of respiratory metabolism in Saccharomyces cerevisiae. BMC Genomics 10():461

Abstract: ABSTRACT: BACKGROUND: The industrially important yeast Saccharomyces cerevisiae is able to grow both in the presence and absence of oxygen. However, the regulation of its metabolism in conditions of intermediate oxygen availability is not well characterised. We assessed the effect of oxygen provision on the transcriptome and proteome of S. cerevisiae in glucose-limited chemostat cultivations in anaerobic and aerobic conditions, and with three intermediate (0.5, 1.0 and 2.8% oxygen) levels of oxygen in the feed gas. RESULTS: The main differences in the transcriptome were observed in the comparison of fully aerobic, intermediate oxygen and anaerobic conditions, while the transcriptome was generally unchanged in conditions receiving different intermediate levels (0.5, 1.0 or 2.8 % oxygen) of oxygen in the feed gas. Comparison of the transcriptome and proteome data suggested post-transcriptional regulation was important, especially in 0.5% oxygen. In the conditions of intermediate oxygen, the genes encoding enzymes of the respiratory pathway were more highly expressed than in either aerobic or anaerobic conditions. A similar trend was also seen in the proteome and in enzyme activities of the TCA cycle. Further, genes encoding proteins of the mitochondrial translation machinery were present at higher levels in all oxygen-limited and anaerobic conditions, compared to fully aerobic conditions. CONCLUSIONS: Global upregulation of genes encoding components of the respiratory pathway under conditions of intermediate oxygen suggested a regulatory mechanism to control these genes as a response to the need of more efficient energy production. Further, cells grown in three different intermediate oxygen levels were highly similar at the level of transcription, while they differed at the proteome level, suggesting post-transcriptional mechanisms leading to distinct physiological modes of respiro-fermentative metabolism.

Status: Published Type: Journal Article PubMed ID: 19804647

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AAT2 ACO1 ACS1 ADH1 ADH2 AFR1 AGA1 AGA2 ALD4 ALD6
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ANT1 ARE1 ARN1 ASH1 ATG26 ATP1 ATP2 ATP3 ATP5 ATP7
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AUS1 AXL1 BUD4 BUD7 BUD8 CAT2 CBS2 CCC2 CCW12 CHS1
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CIN8 CIT1 CIT2 CIT3 CLN1 CLN2 CLU1 CTA1 CTR1 CWP1
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CYB2 DAN1 DAN4 DAP1 DCI1 DED1 DLD3 DNM1 DSE1 DYS1
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ECI1 ECM22 ENO1 ENO2 ERG1 ERG10 ERG11 ERG2 ERG24 ERG25
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ERG26 ERG27 ERG28 ERG3 ERG6 ERG7 ERG9 ETR1 EXG2 FAA2
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FAR1 FBA1 FET3 FET5 FIG1 FIG2 FKH1 FOX2 FRD1 FRE1
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FTH1 FUM1 FUS1 FUS2 FUS3 GCY1 GFA1 GGC1 GIC1 GIS1
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Topics Genes linked to topics (#91 - 100 )
GND1 GND2 GPA1 GPM1 HAP2 HAP3 HAP4 HAP5 HES1 HMG2
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HO HTS1 HXK1 ICL1 IDH1 IDH2 IDP1 IDP2 IDP3 ILV2
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KAR5 KGD1 KGD2 KIN4 KIP2 KSS1 KTR2 LPD1 LPX1 LSC1
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LSC2 MBA1 MCR1 MDG1 MDH1 MDH2 MDH3 MEF1 MET17 MGM1
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MHP1 MLS1 MSB2 MSG5 MSN2 MSN4 NCP1 NQM1 OSH2 PAB1
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PAU17 PAU18 PAU2 PAU23 PAU24 PAU3 PAU5 PAU7 PAU9 PCD1
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PET309 PEX1 PEX11 PEX14 PEX15 PEX18 PEX19 PEX2 PEX28 PEX3
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PEX30 PEX5 PEX8 PIN4 PIP2 PNT1 POR1 POT1 POX1 PRM1
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PRM10 PRM5 PRM6 PRM8 PRR2 PUF3 PXA1 PXA2 QCR2 QRI7
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RHR2 RIP1 RPM2 RRF1 SAG1 SAM2 SDH1 SER1 SHH3 SHH4
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SMC2 SMF1 SOD2 SPS19 SST2 STE12 STE23 STE3 STE4 SUN4
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Topics Genes linked to topics (#201 - 210 )
SUT2 SVS1 SWH1 TAL1 TEC1 TES1 TGL1 TIR1 TIR2 TIR3
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Topics Genes linked to topics (#211 - 220 )
TIR4 TKL1 TKL2 TOS1 TOS4 TRR1 TSA1 TUB3 TUB4 TUF1
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UME6 UNG1 UPC2 UTH1 VIK1 XBP1 YFL052W YJL045W YMR018W YOR296W
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YTA12 ZRC1 ZWF1
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