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Katju V, et al.  (2009) Variation in gene duplicates with low synonymous divergence in Saccharomyces cerevisiae relative to Caenorhabditis elegans. Genome Biol 10(7):R75

Abstract: ABSTRACT: BACKGROUND: The direct examination of large, unbiased samples of young gene duplicates in their early stages of evolution is crucial to understanding the origin, divergence and preservation of new genes. Furthermore, comparative analysis of multiple genomes is necessary to determine whether patterns of gene duplication can be generalized across diverse lineages or are species-specific. Here we present results from an analysis comprising 68 duplication events in the Saccharomyces cerevisiae genome. We partition the yeast duplicates into ohnologs (generated by a whole-genome duplication) and non-ohnologs (from small-scale duplication events) to determine whether their disparate origins commit them to divergent evolutionary trajectories and genomic attributes. RESULTS: We conclude that for the most part, ohnologs tend to appear remarkably similar to non-ohnologs in their structural attributes (specifically the relative composition frequencies of complete, partial and chimeric duplicates), the discernible length of the duplicated region (duplication span) as well as genomic location. Furthermore, we find notable differences in the features of S. cerevisiae gene duplicates relative to those of another eukaryote, Caenorhabditis elegans with respect to chromosomal location, extent of duplication and the relative frequencies of complete, partial and chimeric duplications. CONCLUSIONS: We conclude that the variation between yeast and worm duplicates can be attributed to differing mechanisms of duplication in conjunction with the varying efficacy of natural selection in these two genomes as dictated by their disparate effective population sizes.

Status: Published Type: Journal Article PubMed ID: 19594930

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Number of different genes curated to this paper: 188

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Topics Genes linked to topics (#1 - 10 )
AAD15 AAD3 ANB1 ASP3-1 ASP3-2 ASP3-3 ASP3-4 BUD5 COS1 COS5
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Topics Genes linked to topics (#11 - 20 )
CUP1-1 CUP1-2 DOG1 DOG2 DSF1 EFT1 EFT2 FLO1 FLO5 GEX1
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Topics Genes linked to topics (#21 - 30 )
GEX2 HHF1 HHF2 HMLALPHA1 HMLALPHA2 HSC82 HSP82 HXT13 HXT17 HXT6
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Topics Genes linked to topics (#31 - 40 )
HXT7 HYP2 IMD1 IMD2 LYS20 LYS21 MATALPHA1 MATALPHA2 MST27 MST28
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Topics Genes linked to topics (#41 - 50 )
PHO11 PHO12 PMP1 PMP2 PRM8 PRM9 RPL11A RPL11B RPL13A RPL13B
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Topics Genes linked to topics (#51 - 60 )
RPL14A RPL14B RPL15A RPL15B RPL18A RPL18B RPL19A RPL19B RPL1A RPL1B
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Topics Genes linked to topics (#61 - 70 )
RPL20A RPL20B RPL21A RPL21B RPL24A RPL24B RPL26A RPL26B RPL2A RPL2B
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
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Topics Genes linked to topics (#71 - 80 )
RPL31A RPL31B RPL35A RPL35B RPL41A RPL41B RPL42A RPL42B RPL4A RPL4B
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
DNA/RNA Sequence Features blue ball blue ball blue ball blue ball blue ball blue ball
Evolution blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
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Topics Genes linked to topics (#81 - 90 )
RPL6A RPL6B RPL7A RPL7B RPL8A RPL8B RPL9A RPL9B RPS10A RPS10B
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
DNA/RNA Sequence Features blue ball blue ball blue ball blue ball blue ball blue ball
Evolution blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Fungal Related Genes/Proteins blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Primary Literature blue ball blue ball
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  • To go to the Locus page for a gene, click on the gene name.

Topics Genes linked to topics (#91 - 100 )
RPS11A RPS11B RPS16A RPS16B RPS17A RPS17B RPS18A RPS18B RPS19A RPS19B
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
DNA/RNA Sequence Features blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Evolution blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Fungal Related Genes/Proteins blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#101 - 110 )
RPS1A RPS1B RPS23A RPS23B RPS24A RPS24B RPS25A RPS25B RPS30A RPS30B
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
DNA/RNA Sequence Features blue ball blue ball blue ball blue ball blue ball blue ball
Evolution blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
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Topics Genes linked to topics (#111 - 120 )
RPS4A RPS4B RPS6A RPS6B RPS8A RPS8B RSC30 SAM4 SSA1 SSA2
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
DNA/RNA Sequence Features blue ball blue ball blue ball blue ball
Evolution blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
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Topics Genes linked to topics (#121 - 130 )
SSB1 SSB2 SSF1 SSF2 TDH2 TDH3 TEF1 TEF2 TIF1 TIF2
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Evolution blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
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Topics Genes linked to topics (#131 - 140 )
TPO2 TPO3 VBA3 VBA5 VEL1 YAR060C YAR061W YAR062W YAR064W YAR066W
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Evolution blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Fungal Related Genes/Proteins blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Primary Literature blue ball

Topics Genes linked to topics (#141 - 150 )
YAR068W YAR069C YAR070C YAR075W YBL107W-A YCL065W YCL068C YCR041W YCR108C YDR543C
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Evolution blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
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Topics Genes linked to topics (#151 - 160 )
YER138W-A YER188C-A YER189W YHR054C YHR212C YHR212W-A YHR213W YHR213W-B YHR214C-B YHR214C-D
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Evolution blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Fungal Related Genes/Proteins blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Primary Literature blue ball

Topics Genes linked to topics (#161 - 170 )
YHR214W YHR214W-A YIL001W YIL029C YIL177C YJR162C YLR154C-H YLR156C-A YLR156W YLR157C-C
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball
DNA/RNA Sequence Features blue ball
Evolution blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
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Primary Literature blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#171 - 180 )
YLR157W-D YLR159C-A YLR159W YLR161W YLR462W YLR464W YMR321C YNL018C YNL019C YNL033W
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Evolution blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
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Primary Literature blue ball blue ball blue ball

Topics Genes linked to topics (#181 - 188 )
YNL034W YNL337W YNR073C YOL166W-A YOR387C YPR071W YRF1-1 YRF1-4
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball
Evolution blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
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