Chen AK, et al. (2009) Response of Saccharomyces cerevisiae to stress-free acidification. J Microbiol 47(1):1-8
Abstract: Genome-wide transcriptional analysis of a Saccharomyces cerevisiae batch culture revealed that more than 829 genes were regulated in response to an environmental shift from pH 6 to pH 3 by added sulfuric acid. This shift in pH was not detrimental to the rate of growth compared to a control culture that was maintained at pH 6 and the transcriptional changes most strikingly implicated not up- but down-regulation of stress responses. In addition, the transcriptional changes upon acid addition indicated remodeling of the cell wall and central carbon metabolism. The overall trend of changes was similar for the pH-shift experiment and the pH 6 control. However, the changes in the pH 6 control were much weaker and occurred 2.5 h later than in the pH-shift experiment. Thus, the reaction to the steep pH decrease was an immediate response within the normal repertoire of adaptation shown in later stages of fermentation at pH 6. Artificially preventing the yeast from acidifying the medium may be considered physiologically stressful under the tested conditions.
| Status: Published | Type: Journal Article | PubMed ID: 19229485 |
Topics addressed in this paper
Number of different genes curated to this paper: 231
- To find other papers on a gene and topic, click on the colored ball in the appropriate box.
- displays other papers with information about that topic for that gene.
- displays other papers in SGD that are associated with that topic.
The topic is addressed in these papers but does not describe a specific gene or chromosomal feature.
- To go to the Locus page for a gene, click on the gene name.
| Topics | Topics not linked to Genes | Genes linked to topics (#1 - 10 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| ACE2 | ACO1 | ARN1 | ARN2 | ARP4 | ATP1 | ATP16 | ATP2 | ATP3 | BRF1 | ||
| Additional Literature | | | | | | | | | | | |
| Genomic expression study |
| ||||||||||
| Industrial Applications |
| ||||||||||
| Omics |
| ||||||||||
| RNA Levels and Processing | | | | | | | | | | | |
| Topics | Genes linked to topics (#11 - 20 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CAP1 | CAP2 | CBF5 | CCC2 | CDC7 | CEG1 | CFT2 | CIS3 | CIT1 | CIT2 | |
| Additional Literature | | | | | | | | | | |
| RNA Levels and Processing | | | | | | | | | | |
| Topics | Genes linked to topics (#21 - 30 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CIT3 | COT1 | CPR2 | CRS5 | CTH1 | CTK2 | CTL1 | CUP1-2 | CWC2 | CYC1 | |
| Additional Literature | | | | | | | | | | |
| RNA Levels and Processing | | | | | | | | | | |
- To find other papers on a gene and topic, click on the colored ball in the appropriate box.
- displays other papers with information about that topic for that gene.
- displays other papers in SGD that are associated with that topic.
The topic is addressed in these papers but does not describe a specific gene or chromosomal feature.
- To go to the Locus page for a gene, click on the gene name.
| Topics | Genes linked to topics (#31 - 40 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CYC7 | CYT1 | DBP10 | DBP5 | DBR1 | DIS3 | DPB3 | DPL1 | DUS1 | EBS1 | |
| Additional Literature | | | | | | | | | | |
| RNA Levels and Processing | | | | | | | | | | |
| Topics | Genes linked to topics (#41 - 50 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| ECM12 | ECM3 | ECM8 | ENO2 | ENP1 | ESA1 | FBP26 | FET3 | FHL1 | FIT1 | |
| Additional Literature | | | | | | | | | | |
| RNA Levels and Processing | | | | | | | | | | |
| Topics | Genes linked to topics (#51 - 60 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| FPR3 | FRE1 | FRE2 | GAL11 | GAS1 | GCD10 | GCD14 | GCY1 | GPD1 | GRE3 | |
| Additional Literature | | | | | | | | | | |
| RNA Levels and Processing | | | | | | | | | | |
- To find other papers on a gene and topic, click on the colored ball in the appropriate box.
- displays other papers with information about that topic for that gene.
- displays other papers in SGD that are associated with that topic.
The topic is addressed in these papers but does not describe a specific gene or chromosomal feature.
- To go to the Locus page for a gene, click on the gene name.
| Topics | Genes linked to topics (#61 - 70 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| GRX1 | GRX2 | GTR1 | HAC1 | HAS1 | HCM1 | HIR2 | HMX1 | HO | HSP104 | |
| Additional Literature | | | | | | | | | | |
| RNA Levels and Processing | | | | | | | | | | |
| Topics | Genes linked to topics (#71 - 80 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| HSP12 | HSP42 | HSP78 | HSP82 | HUL5 | IDH1 | IMG1 | IMP3 | INO2 | IST2 | |
| Additional Literature | | | | | | | | | | |
| RNA Levels and Processing | | | | | | | | | | |
| Topics | Genes linked to topics (#81 - 90 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| ISY1 | KGD2 | KRR1 | KTR3 | LRE1 | LSC2 | LSM8 | LYS20 | MAK11 | MAK16 | |
| Additional Literature | | | | | | | | | | |
| RNA Levels and Processing | | | | | | | | | | |
- To find other papers on a gene and topic, click on the colored ball in the appropriate box.
- displays other papers with information about that topic for that gene.
- displays other papers in SGD that are associated with that topic.
The topic is addressed in these papers but does not describe a specific gene or chromosomal feature.
- To go to the Locus page for a gene, click on the gene name.
| Topics | Genes linked to topics (#91 - 100 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| MAK5 | MCM1 | MCR1 | MDH1 | MED2 | MET18 | MET30 | MET32 | MLP1 | MOG1 | |
| Additional Literature | | | | | | | | | | |
| RNA Levels and Processing | | | | | | | | | | |
| Topics | Genes linked to topics (#101 - 110 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| MOT2 | MRP17 | MRP51 | MRPL10 | MRPL11 | MRPL19 | MRPL25 | MRPL28 | MRPL38 | MRPL40 | |
| Additional Literature | | | | | | | | | | |
| RNA Levels and Processing | | | | | | | | | | |
| Topics | Genes linked to topics (#111 - 120 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| MRPL6 | MRPL9 | MRPS17 | MRPS9 | MRS1 | MSH6 | MSN2 | MSN4 | MSN5 | MTR3 | |
| Additional Literature | | | | | | | | | | |
| RNA Levels and Processing | | | | | | | | | | |
| Topics | Genes linked to topics (#121 - 130 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| MUD1 | MXR2 | MYO3 | NAB2 | NAB3 | NAM8 | NBP1 | NDI1 | NHP2 | NHP6B | |
| Additional Literature | | | | | | | | | | |
| RNA Levels and Processing | | | | | | | | | | |
| Topics | Genes linked to topics (#131 - 140 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| NIC96 | NIS1 | NMA2 | NOP13 | NOP2 | NOP7 | NSE1 | NTH1 | NUP1 | NUP100 | |
| Additional Literature | | | | | | | | | | |
| RNA Levels and Processing | | | | | | | | | | |
| Topics | Genes linked to topics (#141 - 150 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| NUP192 | NUP53 | NUP82 | PCA1 | PDC1 | PHO89 | PIB1 | PIM1 | PIR1 | POL32 | |
| Additional Literature | | | | | | | | | | |
| Protein Processing/Modification/Regulation | | |||||||||
| RNA Levels and Processing | | | | | | | | | | |
| Topics | Genes linked to topics (#151 - 160 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| POM34 | PRP11 | PRP2 | PRP22 | PRP31 | PRP5 | PRP6 | PTC1 | PUS6 | PYC2 | |
| Additional Literature | | | | | | | | | | |
| RNA Levels and Processing | | | | | | | | | | |
| Topics | Genes linked to topics (#161 - 170 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| QCR8 | RAD54 | RAI1 | RAT1 | RDH54 | REB1 | REC8 | REV1 | RGT1 | RIA1 | |
| Additional Literature | | | | | | | | | | |
| RNA Levels and Processing | | | | | | | | | | |
| Topics | Genes linked to topics (#171 - 180 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| RIC1 | RIP1 | RLP7 | ROT1 | RPB5 | RPB8 | RPC25 | RPC31 | RPC40 | RRN7 | |
| Additional Literature | | | | | | | | | | |
| RNA Levels and Processing | | | | | | | | | | |
| Topics | Genes linked to topics (#181 - 190 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| RSF2 | RSM23 | RSM27 | RSM7 | RSP5 | SAC6 | SDH1 | SDH4 | SDP1 | SEC13 | |
| Additional Literature | | | | | | | | | | |
| RNA Levels and Processing | | | | | | | | | | |
| Topics | Genes linked to topics (#191 - 200 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| SED1 | SET1 | SIP4 | SIT1 | SKN7 | SLD2 | SLX4 | SMM1 | SNF2 | SNU13 | |
| Additional Literature | | | | | | | | | | |
| RNA Levels and Processing | | | | | | | | | | |
| Topics | Genes linked to topics (#201 - 210 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| SPB4 | SRB5 | SRS2 | SSA4 | SSL2 | STO1 | TAF2 | TAF4 | TIS11 | TPS1 | |
| Additional Literature | | | | | | | | | | |
| RNA Levels and Processing | | | | | | | | | | |
| Topics | Genes linked to topics (#211 - 220 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| TPS2 | TPS3 | TRK2 | TRM7 | TRM8 | TRX3 | TSL1 | TSR1 | UBC4 | UBC8 | |
| Additional Literature | | | | | | | | | | |
| RNA Levels and Processing | | | | | | | | | | |
| Topics | Genes linked to topics (#221 - 230 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| UBI4 | UGA3 | ULP1 | UTP11 | UTP15 | UTP9 | YDC1 | YGP1 | YKU70 | YMR034C | |
| Additional Literature | | | | | | | | | | |
| RNA Levels and Processing | | | | | | | | | | |
| Topics | Genes linked to topics (#231 ) |
|---|---|
| YPD1 | |
| Additional Literature | |
| RNA Levels and Processing | |





