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Kress TL, et al.  (2008) A Single SR-like Protein, Npl3, Promotes Pre-mRNA Splicing in Budding Yeast. Mol Cell 32(5):727-34

Abstract: Mammalian SR proteins are a family of reversibly phosphorylated RNA binding proteins primarily studied for their roles in alternative splicing. While budding yeast lack alternative splicing, they do have three SR-like proteins: Npl3, Gbp2, and Hrb1. However, these have been best characterized for their roles in mRNA export, leaving their potential roles in splicing largely unexplored. Here, we combined high-density genetic interaction profiling and genome-wide splicing-sensitive microarray analysis to demonstrate that a single SR-like protein, Npl3, is required for efficient splicing of a large set of pre-mRNAs in Saccharomyces cerevisiae. We tested the hypothesis that Npl3 promotes splicing by facilitating cotranscriptional recruitment of splicing factors. Using chromatin immunoprecipitation, we showed that mutation of NPL3 reduces the occupancy of U1 and U2 snRNPs at genes whose splicing is stimulated by Nbl3. This result provides strong evidence that an SR protein can promote recruitment of splicing factors to chromatin.

Status: Published Type: Journal Article PubMed ID: 19061647

Topics addressed in this paper

Number of different genes curated to this paper: 34

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Topics Topics not linked to Genes Genes linked to topics (#1 - 10 )
BUD13 CUS2 CWC21 GBP2 HRB1 HTZ1 IST3 LEA1 LSM1 MLP1
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Genetic Interactions blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Genomic expression study yg ball
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Topics Genes linked to topics (#11 - 20 )
MUD1 MUD2 NAM8 NPL3 PAT1 PRP11 PRP2 PRP4 PRP42 PRP43
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Function/Process blue ball
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Mutants/Phenotypes blue ball blue ball
Primary Literature blue ball
Protein-Nucleic Acid Interactions blue ball blue ball blue ball
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Strains/Constructs blue ball blue ball

Topics Genes linked to topics (#21 - 30 )
RTT103 SGF29 SKI2 SKI3 SKI8 SNT309 SNU114 SNU56 SNU66 SNU71
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Genetic Interactions blue ball blue ball blue ball blue ball blue ball blue ball
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Topics Genes linked to topics (#31 - 34 )
SWR1 TGS1 THP2 VPS71
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