SGD Paper Help


Page Contents:
Qi Y, et al.  (2008) Finding friends and enemies in an enemies-only network: A graph diffusion kernel for predicting novel genetic interactions and co-complex membership from yeast genetic interactions. Genome Res 18(12):1991-2004

Abstract: The yeast synthetic lethal genetic interaction network contains rich information about underlying pathways and protein complexes as well as new genetic interactions yet to be discovered. We have developed a graph diffusion kernel as a unified framework for inferring complex/pathway membership analogous to "friends" and genetic interactions analogous to "enemies" from the genetic interaction network. When applied to the Saccharomyces cerevisiae genetic interaction network, we can achieve a precision around 50% with 20 to 50% recall in the genome-wide prediction of new genetic interactions, supported by experimental validation. The kernels show significant improvement over previous best methods for predicting genetic interactions and protein co-complex membership from genetic interaction data.

Status: Published Type: Journal Article PubMed ID: 18832443

Topics addressed in this paper

Number of different genes curated to this paper: 184

Jump to Summary Chart for:
  • To find other papers on a gene and topic, click on the colored ball in the appropriate box.
  • displays other papers with information about that topic for that gene.
  • displays other papers in SGD that are associated with that topic.
    The topic is addressed in these papers but does not describe a specific gene or chromosomal feature.
  • To go to the Locus page for a gene, click on the gene name.
Topics Topics not linked to Genes Genes linked to topics (#1 - 10 )
AAH1 ADA2 AGE1 AGE2 AIM29 ALG3 ALG5 ALG6 ALG8 ALG9
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Cellular Location blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Computational analysis blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Genetic Interactions blue ball
Large-scale genetic interaction blue ball
Omics yg ball

Topics Genes linked to topics (#11 - 20 )
ANP1 ARL3 ARP3 ARP4 ASK1 BCY1 BDF1 BEM2 BEM4 BET2
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Cellular Location blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Computational analysis blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Genetic Interactions blue ball blue ball blue ball
Large-scale genetic interaction blue ball blue ball blue ball

Topics Genes linked to topics (#21 - 30 )
BNI4 BRE1 BUB2 BUR2 BZZ1 CAX4 CBF2 CDC20 CDC28 CDH1
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Cellular Location blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Computational analysis blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Genetic Interactions blue ball blue ball blue ball blue ball
Large-scale genetic interaction blue ball blue ball blue ball blue ball
Primary Literature blue ball
Jump to Summary Chart for:
  • To find other papers on a gene and topic, click on the colored ball in the appropriate box.
  • displays other papers with information about that topic for that gene.
  • displays other papers in SGD that are associated with that topic.
    The topic is addressed in these papers but does not describe a specific gene or chromosomal feature.
  • To go to the Locus page for a gene, click on the gene name.

Topics Genes linked to topics (#31 - 40 )
CEP3 CHS7 CLA4 CMD1 COG4 CSE2 CSE4 CTF13 CTF3 DBP10
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Cellular Location blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Computational analysis blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Genetic Interactions blue ball blue ball blue ball
Large-scale genetic interaction blue ball blue ball blue ball

Topics Genes linked to topics (#41 - 50 )
DEP1 DIE2 DRS2 DSL1 DSS4 EAF3 EAF5 EAF6 EAF7 ECM33
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Cellular Location blue ball blue ball blue ball blue ball blue ball
Computational analysis blue ball blue ball blue ball blue ball blue ball
Genetic Interactions blue ball blue ball blue ball blue ball blue ball
Large-scale genetic interaction blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#51 - 60 )
ECO1 ELP2 ELP3 ELP4 ELP6 EPL1 ESA1 FET3 FTR1 GCN5
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Cellular Location blue ball blue ball blue ball blue ball blue ball
Computational analysis blue ball blue ball blue ball blue ball blue ball
Genetic Interactions blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Large-scale genetic interaction blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Primary Literature blue ball blue ball blue ball
Jump to Summary Chart for:
  • To find other papers on a gene and topic, click on the colored ball in the appropriate box.
  • displays other papers with information about that topic for that gene.
  • displays other papers in SGD that are associated with that topic.
    The topic is addressed in these papers but does not describe a specific gene or chromosomal feature.
  • To go to the Locus page for a gene, click on the gene name.

Topics Genes linked to topics (#61 - 70 )
GDI1 GEA1 GEA2 GYP1 HFI1 HOF1 HPR1 HRT1 HSC82 HTZ1
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Cellular Location blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Computational analysis blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Genetic Interactions blue ball blue ball
Large-scale genetic interaction blue ball blue ball

Topics Genes linked to topics (#71 - 80 )
IES3 IKI3 IRC3 ISW1 ISW2 ITC1 IXR1 KIC1 KIP2 LGE1
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Cellular Location blue ball blue ball blue ball blue ball blue ball blue ball
Computational analysis blue ball blue ball blue ball blue ball blue ball blue ball
Genetic Interactions blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Large-scale genetic interaction blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Primary Literature blue ball blue ball blue ball

Topics Genes linked to topics (#81 - 90 )
MCM21 MDM30 MED1 MED2 MET22 MIF2 MND2 MPS1 MPS2 MPS3
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Cellular Location blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Computational analysis blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Genetic Interactions blue ball blue ball
Large-scale genetic interaction blue ball blue ball
Jump to Summary Chart for:
  • To find other papers on a gene and topic, click on the colored ball in the appropriate box.
  • displays other papers with information about that topic for that gene.
  • displays other papers in SGD that are associated with that topic.
    The topic is addressed in these papers but does not describe a specific gene or chromosomal feature.
  • To go to the Locus page for a gene, click on the gene name.

Topics Genes linked to topics (#91 - 100 )
MSB3 MSI1 MSO1 MTC2 MTW1 NCS2 NEO1 NHP6B NPL6 NTO1
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Cellular Location blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Computational analysis blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Genetic Interactions blue ball blue ball blue ball
Large-scale genetic interaction blue ball blue ball blue ball

Topics Genes linked to topics (#101 - 110 )
NUT1 OST1 OST5 PAA1 PAB1 PAF1 PEX32 PHO2 PHO23 PKH1
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Cellular Location blue ball blue ball blue ball
Computational analysis blue ball blue ball blue ball
Genetic Interactions blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Large-scale genetic interaction blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#111 - 120 )
PKH2 PKR1 PRB1 PRE9 RAD6 RGD1 RIC1 RLF2 RPD3 RSC2
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Cellular Location blue ball blue ball blue ball
Computational analysis blue ball blue ball blue ball
Genetic Interactions blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Large-scale genetic interaction blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#121 - 130 )
RTT109 RUD3 SAP30 SAS3 SDC1 SDS3 SEC2 SEC4 SEC9 SFH1
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Cellular Location blue ball blue ball blue ball blue ball blue ball
Computational analysis blue ball blue ball blue ball blue ball blue ball
Genetic Interactions blue ball blue ball blue ball blue ball blue ball
Large-scale genetic interaction blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#131 - 140 )
SFI1 SGF73 SHR3 SIC1 SIN3 SIN4 SLY1 SNF5 SNT1 SOH1
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Cellular Location blue ball blue ball blue ball blue ball blue ball
Computational analysis blue ball blue ball blue ball blue ball blue ball
Genetic Interactions blue ball blue ball blue ball blue ball blue ball
Large-scale genetic interaction blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#141 - 150 )
SPA2 SPT20 SPT3 SPT7 SPT8 SRO7 SSA1 SSN2 SSN3 SSN8
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Cellular Location blue ball blue ball blue ball
Computational analysis blue ball blue ball blue ball
Genetic Interactions blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Large-scale genetic interaction blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#151 - 160 )
STE14 STE50 STH1 SWC4 SWD1 SWD3 SWI4 SWI6 SWM1 TEL1
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Cellular Location blue ball blue ball
Computational analysis blue ball blue ball
Genetic Interactions blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Large-scale genetic interaction blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#161 - 170 )
TIP20 UBS1 ULA1 USO1 VMA1 VMA16 VMA2 VMA22 VMA7 VMA8
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Cellular Location blue ball blue ball blue ball blue ball
Computational analysis blue ball blue ball blue ball blue ball
Genetic Interactions blue ball blue ball blue ball blue ball blue ball blue ball
Large-scale genetic interaction blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#171 - 180 )
VPH2 WHI5 YAF9 YBL071C YDL050C YER156C YKL118W YKU80 YNG1 YNG2
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Cellular Location blue ball blue ball
Computational analysis blue ball blue ball
Genetic Interactions blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Large-scale genetic interaction blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Primary Literature blue ball

Topics Genes linked to topics (#181 - 184 )
YOR331C YPT11 YTA12 YTA7
Additional Literature blue ball blue ball blue ball blue ball
Cellular Location blue ball blue ball
Computational analysis blue ball blue ball
Genetic Interactions blue ball blue ball
Large-scale genetic interaction blue ball blue ball

Author Searches

To find contact information or other publications by the authors of this paper, follow these three steps:
  1. (1) Choose an author,
  2. (2) Choose a search parameter,
  3. (3) Click to implement
Page Contents: