Johansson MJ, et al. (2008) Eukaryotic wobble uridine modifications promote a functionally redundant decoding system. Mol Cell Biol 28(10):3301-12
Abstract: The translational decoding properties of tRNAs are modulated by naturally occurring modifications of their nucleosides. Uridines located at the wobble position (nucleoside 34) in eukaryotic cytoplasmic tRNAs often harbor a 5-methoxycarbonylmethyl (mcm(5)) or a 5-carbamoylmethyl (ncm(5)) side-chain and sometimes an additional 2-thio (s(2)) or 2'-O-methyl group. Although a variety of models explaining the role of these modifications have been put forth, their in vivo functions have not been defined. In this study, we utilized recently characterized modification-deficient yeast cells to test the wobble rules in vivo. We show that mcm(5) and ncm(5) side-chains promote decoding of G-ending codons and that concurrent mcm(5) and s(2) groups improve reading of both A- and G-ending codons. Moreover, the observation that the mcm(5)U34- and some ncm(5)U34-containing tRNAs efficiently read G-ending codons challenges the notion that eukaryotes do not use U-G wobbling.
| Status: Published | Type: Journal Article | PubMed ID: 18332122 |
Topics addressed in this paper
Number of different genes curated to this paper: 15
- To find other papers on a gene and topic, click on the colored ball in the appropriate box.
- displays other papers with information about that topic for that gene.
- displays other papers in SGD that are associated with that topic.
The topic is addressed in these papers but does not describe a specific gene or chromosomal feature.
- To go to the Locus page for a gene, click on the gene name.
| Topics | Genes linked to topics (#1 - 10 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CDC65 | ELP3 | HSX1 | NCS6 | SUF10 | SUF2 | SUF3 | SUF5 | SUP61 | tE(CUC)D | |
| Additional Literature | | | | | | | | | | |
| DNA/RNA Sequence Features | | | | | | | | | ||
| Mutants/Phenotypes | | | | | | | | | | |
| Strains/Constructs | | | | | | | | | | |
| Topics | Genes linked to topics (#11 - 15 ) | ||||
|---|---|---|---|---|---|
| tE(CUC)I | TRM9 | TRT2 | tV(CAC)D | tV(CAC)H | |
| Additional Literature | | | | | |
| DNA/RNA Sequence Features | | | | | |
| Mutants/Phenotypes | | | | | |
| Strains/Constructs | | | | | |




