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Johansson MJ, et al.  (2008) Eukaryotic wobble uridine modifications promote a functionally redundant decoding system. Mol Cell Biol 28(10):3301-12

Abstract: The translational decoding properties of tRNAs are modulated by naturally occurring modifications of their nucleosides. Uridines located at the wobble position (nucleoside 34) in eukaryotic cytoplasmic tRNAs often harbor a 5-methoxycarbonylmethyl (mcm(5)) or a 5-carbamoylmethyl (ncm(5)) side-chain and sometimes an additional 2-thio (s(2)) or 2'-O-methyl group. Although a variety of models explaining the role of these modifications have been put forth, their in vivo functions have not been defined. In this study, we utilized recently characterized modification-deficient yeast cells to test the wobble rules in vivo. We show that mcm(5) and ncm(5) side-chains promote decoding of G-ending codons and that concurrent mcm(5) and s(2) groups improve reading of both A- and G-ending codons. Moreover, the observation that the mcm(5)U34- and some ncm(5)U34-containing tRNAs efficiently read G-ending codons challenges the notion that eukaryotes do not use U-G wobbling.

Status: Published Type: Journal Article PubMed ID: 18332122

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CDC65 ELP3 HSX1 NCS6 SUF10 SUF2 SUF3 SUF5 SUP61 tE(CUC)D
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tE(CUC)I TRM9 TRT2 tV(CAC)D tV(CAC)H
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