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Oeffinger M, et al. (2007) Comprehensive analysis of diverse ribonucleoprotein complexes. Nat Methods 4(11):951-6
Abstract: The study of the dynamic interactome of cellular ribonucleoprotein (RNP) particles has been hampered by severe methodological limitations. In particular, the affinity purification of intact RNP complexes from cell lysates suffers from RNA degradation, loss of interacting macromolecules and poor overall yields. Here we describe a rapid affinity-purification method for efficient isolation of the subcomplexes that dynamically organize different RNP biogenesis pathways in Saccharomyces cerevisiae. Our method overcomes many of the previous limitations to produce large RNP interactomes with almost no contamination.
| Status: Published | Type: Journal Article | PubMed ID: 17922018 |
Topics addressed in this paper
Number of different genes curated to this paper: 287
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| Topics | Genes linked to topics (#1 - 10 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| ACB1 | ACT1 | ADE3 | AIM34 | ASH1 | ASM4 | BEM2 | BRR2 | BRX1 | BUD8 | |
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| Topics | Genes linked to topics (#11 - 20 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CBC2 | CBF5 | CDC3 | CDC31 | CFT1 | CFT2 | CHD1 | CIC1 | CIS3 | CLB2 | |
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| Topics | Genes linked to topics (#21 - 30 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CLP1 | CPS1 | CTK2 | CTK3 | CYS3 | DBP10 | DBP2 | DBP5 | DBP9 | DED1 | |
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| Protein-Nucleic Acid Interactions | | | ||||||||
| Protein-protein Interactions | | | | | | | | | ||
| RNA Levels and Processing | | | ||||||||
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| Topics | Genes linked to topics (#31 - 40 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| DED81 | DIM1 | DRS1 | EBP2 | ENP1 | ERB1 | ERG2 | ESC1 | FCF2 | FPR3 | |
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| Topics | Genes linked to topics (#41 - 50 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| FPR4 | FRS2 | GAR1 | GBP2 | GLE1 | GLE2 | HAS1 | HOM2 | HPR1 | HRB1 | |
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| Topics | Genes linked to topics (#51 - 60 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| HRR25 | HTA2 | IMP3 | IMP4 | IPI3 | IRC8 | IST2 | JIP5 | KAP123 | KAP95 | |
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| Protein-Nucleic Acid Interactions | | | ||||||||
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| RNA Levels and Processing | | | ||||||||
| Techniques and Reagents | | | | | | | | | ||
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| Topics | Genes linked to topics (#61 - 70 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| KRE33 | KRR1 | LCB1 | LCP5 | LOC1 | LUC7 | MAK16 | MAK21 | MAK5 | MDN1 | |
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| Topics | Genes linked to topics (#71 - 80 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| MEX67 | MFT1 | MID2 | MLP1 | MLP2 | MMR1 | MPP10 | MRT4 | MTR2 | MTR4 | |
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| Protein-Nucleic Acid Interactions | | | ||||||||
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| Topics | Genes linked to topics (#81 - 90 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| MYO1 | MYO2 | MYO4 | NAB2 | NAB3 | NHP2 | NIC96 | NIP7 | NOC2 | NOC3 | |
| Additional Literature | | | | | | | | | | |
| Protein-protein Interactions | | | | | | | | | | |
| Techniques and Reagents | | | | | | | | | | |
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The topic is addressed in these papers but does not describe a specific gene or chromosomal feature.
- To go to the Locus page for a gene, click on the gene name.
| Topics | Genes linked to topics (#91 - 100 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| NOC4 | NOG1 | NOP1 | NOP10 | NOP12 | NOP13 | NOP14 | NOP16 | NOP2 | NOP4 | |
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| Topics | Genes linked to topics (#101 - 110 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| NOP53 | NOP56 | NOP58 | NOP7 | NOP9 | NPL3 | NRD1 | NSA1 | NSA2 | NSP1 | |
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| Topics | Genes linked to topics (#111 - 120 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| NSR1 | NTF2 | NUG1 | NUP1 | NUP100 | NUP116 | NUP120 | NUP133 | NUP157 | NUP159 | |
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| Topics | Genes linked to topics (#121 - 130 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| NUP170 | NUP188 | NUP192 | NUP49 | NUP53 | NUP57 | NUP60 | NUP82 | NUP84 | NUP85 | |
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| Topics | Genes linked to topics (#131 - 140 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PAB1 | PAC10 | PMT2 | PNO1 | POM34 | PRP11 | PRP19 | PRP28 | PRP39 | PRP4 | |
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| Topics | Genes linked to topics (#141 - 150 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PRP40 | PRP42 | PRP43 | PRP45 | PRP46 | PRP5 | PRP6 | PRP8 | PRP9 | PRY1 | |
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| Topics | Genes linked to topics (#151 - 160 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PRY2 | PSE1 | RAI1 | RAT1 | RHR2 | RIX1 | RIX7 | RLP24 | RLP7 | RPF1 | |
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| Topics | Genes linked to topics (#161 - 170 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| RPF2 | RPL10 | RPL11A | RPL12B | RPL13A | RPL13B | RPL14A | RPL14B | RPL16A | RPL16B | |
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| Protein-protein Interactions | | | | | | | | | | |
| Techniques and Reagents | | | | | | | | | | |
| Topics | Genes linked to topics (#171 - 180 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| RPL17B | RPL18B | RPL19B | RPL1B | RPL20A | RPL20B | RPL22A | RPL23A | RPL24B | RPL25 | |
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| Protein-protein Interactions | | | | | | | | | | |
| Techniques and Reagents | | | | | | | | | | |
| Topics | Genes linked to topics (#181 - 190 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| RPL26A | RPL26B | RPL27A | RPL27B | RPL28 | RPL3 | RPL30 | RPL31B | RPL33A | RPL35A | |
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| Protein-protein Interactions | | | | | | | | | | |
| Techniques and Reagents | | | | | | | | | | |
| Topics | Genes linked to topics (#191 - 200 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| RPL36B | RPL38 | RPL4A | RPL4B | RPL5 | RPL6A | RPL7A | RPL8A | RPL8B | RPP1 | |
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| Topics | Genes linked to topics (#201 - 210 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| RPS11B | RPS13 | RPS16B | RPS1A | RPS2 | RPS24A | RPS28A | RPS6A | RPS6B | RPS8A | |
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| Topics | Genes linked to topics (#211 - 220 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| RRP1 | RRP12 | RRP14 | RRP15 | RRP17 | RRP5 | RRP9 | RRS1 | RSA3 | SAC3 | |
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| Topics | Genes linked to topics (#221 - 230 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| SAD1 | SCY1 | SEC1 | SEH1 | SGV1 | SHE2 | SHE3 | SHP1 | SMB1 | SMD1 | |
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| Topics | Genes linked to topics (#231 - 240 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| SMD2 | SMD3 | SME1 | SMX2 | SMX3 | SNP1 | SNT309 | SNU114 | SNU13 | SNU56 | |
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| Topics | Genes linked to topics (#241 - 250 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| SNU71 | SOF1 | SPB1 | SPB4 | SRL1 | SRP1 | SSF1 | SSF2 | STM1 | STO1 | |
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| Topics | Genes linked to topics (#251 - 260 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| SUB2 | SUI1 | SUN4 | SUS1 | SYF1 | TAM41 | TCB2 | TEF4 | TEX1 | THO1 | |
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| Topics | Genes linked to topics (#261 - 270 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| THO2 | THP1 | THP2 | TIF4631 | TIF4632 | TIF6 | TKL1 | TOM1 | UBP12 | UBR2 | |
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| Topics | Genes linked to topics (#271 - 280 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| URN1 | UTP10 | UTP14 | UTP20 | UTP30 | WSC2 | XRN1 | YEF3 | YHC1 | YHR127W | |
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| Topics | Genes linked to topics (#281 - 287 ) | ||||||
|---|---|---|---|---|---|---|---|
| YLR179C | YLR413W | YOR248W | YRA1 | YRA2 | YSP2 | YTM1 | |
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