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Oeffinger M, et al.  (2007) Comprehensive analysis of diverse ribonucleoprotein complexes. Nat Methods 4(11):951-6

Abstract: The study of the dynamic interactome of cellular ribonucleoprotein (RNP) particles has been hampered by severe methodological limitations. In particular, the affinity purification of intact RNP complexes from cell lysates suffers from RNA degradation, loss of interacting macromolecules and poor overall yields. Here we describe a rapid affinity-purification method for efficient isolation of the subcomplexes that dynamically organize different RNP biogenesis pathways in Saccharomyces cerevisiae. Our method overcomes many of the previous limitations to produce large RNP interactomes with almost no contamination.

Status: Published Type: Journal Article PubMed ID: 17922018

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ACB1 ACT1 ADE3 AIM34 ASH1 ASM4 BEM2 BRR2 BRX1 BUD8
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CBC2 CBF5 CDC3 CDC31 CFT1 CFT2 CHD1 CIC1 CIS3 CLB2
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CLP1 CPS1 CTK2 CTK3 CYS3 DBP10 DBP2 DBP5 DBP9 DED1
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DED81 DIM1 DRS1 EBP2 ENP1 ERB1 ERG2 ESC1 FCF2 FPR3
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FPR4 FRS2 GAR1 GBP2 GLE1 GLE2 HAS1 HOM2 HPR1 HRB1
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HRR25 HTA2 IMP3 IMP4 IPI3 IRC8 IST2 JIP5 KAP123 KAP95
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KRE33 KRR1 LCB1 LCP5 LOC1 LUC7 MAK16 MAK21 MAK5 MDN1
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MEX67 MFT1 MID2 MLP1 MLP2 MMR1 MPP10 MRT4 MTR2 MTR4
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MYO1 MYO2 MYO4 NAB2 NAB3 NHP2 NIC96 NIP7 NOC2 NOC3
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NOC4 NOG1 NOP1 NOP10 NOP12 NOP13 NOP14 NOP16 NOP2 NOP4
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NOP53 NOP56 NOP58 NOP7 NOP9 NPL3 NRD1 NSA1 NSA2 NSP1
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NSR1 NTF2 NUG1 NUP1 NUP100 NUP116 NUP120 NUP133 NUP157 NUP159
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Topics Genes linked to topics (#121 - 130 )
NUP170 NUP188 NUP192 NUP49 NUP53 NUP57 NUP60 NUP82 NUP84 NUP85
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PAB1 PAC10 PMT2 PNO1 POM34 PRP11 PRP19 PRP28 PRP39 PRP4
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PRP40 PRP42 PRP43 PRP45 PRP46 PRP5 PRP6 PRP8 PRP9 PRY1
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PRY2 PSE1 RAI1 RAT1 RHR2 RIX1 RIX7 RLP24 RLP7 RPF1
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RPF2 RPL10 RPL11A RPL12B RPL13A RPL13B RPL14A RPL14B RPL16A RPL16B
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RPL17B RPL18B RPL19B RPL1B RPL20A RPL20B RPL22A RPL23A RPL24B RPL25
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RPL26A RPL26B RPL27A RPL27B RPL28 RPL3 RPL30 RPL31B RPL33A RPL35A
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RPL36B RPL38 RPL4A RPL4B RPL5 RPL6A RPL7A RPL8A RPL8B RPP1
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Topics Genes linked to topics (#201 - 210 )
RPS11B RPS13 RPS16B RPS1A RPS2 RPS24A RPS28A RPS6A RPS6B RPS8A
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RRP1 RRP12 RRP14 RRP15 RRP17 RRP5 RRP9 RRS1 RSA3 SAC3
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SAD1 SCY1 SEC1 SEH1 SGV1 SHE2 SHE3 SHP1 SMB1 SMD1
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Topics Genes linked to topics (#231 - 240 )
SMD2 SMD3 SME1 SMX2 SMX3 SNP1 SNT309 SNU114 SNU13 SNU56
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Topics Genes linked to topics (#241 - 250 )
SNU71 SOF1 SPB1 SPB4 SRL1 SRP1 SSF1 SSF2 STM1 STO1
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Topics Genes linked to topics (#251 - 260 )
SUB2 SUI1 SUN4 SUS1 SYF1 TAM41 TCB2 TEF4 TEX1 THO1
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Topics Genes linked to topics (#261 - 270 )
THO2 THP1 THP2 TIF4631 TIF4632 TIF6 TKL1 TOM1 UBP12 UBR2
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URN1 UTP10 UTP14 UTP20 UTP30 WSC2 XRN1 YEF3 YHC1 YHR127W
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YLR179C YLR413W YOR248W YRA1 YRA2 YSP2 YTM1
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