Pratico ED and Silverman SK (2007) Ty1 reverse transcriptase does not read through the proposed 2',5'-branched retrotransposition intermediate in vitro. RNA 13(9):1528-36
Abstract: 2',5'-branched RNA was recently proposed as a key Ty1 retrotransposition intermediate, for which cleavage by lariat debranching enzyme (Dbr1p) enables reverse transcription to continue synthesizing the complete Ty1 cDNA. Because dbr1 cells can produce substantial Ty1 cDNA despite lacking Dbr1p, the obligatory intermediacy of branched RNA would require that Ty1 reverse transcriptase (RT) can read through the proposed branch site with considerable efficiency. Here we have used deoxyribozyme-synthesized 2',5'-branched RNA corresponding exactly to the proposed Ty1 branch site for a direct test of this read-through ability. Using an in vitro assay that incorporates all components known to be required for Ty1 cDNA synthesis (including the TyA chaperone protein), Ty1 RT can elongate up to the branch site. Strand transfer from the 2'-arm to the 3'-arm of the branch is observed when the Ty1 RT is RNase H+ (i.e., wild-type) but not when the Ty1 RT is RNase H-. When elongating from either the 2'-arm or the 3'-arm, Ty1 RT reads through the branch site with
Status: Published
Type: Journal Article | Research Support, N.I.H., Extramural | Research Support, Non-U.S. Gov't PubMed ID: 17652136
Topics addressed in this paper
Number of different genes curated to this paper: 32
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| Topics | Genes linked to topics (#1 - 10 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| DBR1 | YARCTy1-1 | YBLWTy1-1 | YBRWTy1-2 | YDRCTy1-1 | YDRCTy1-2 | YDRCTy1-3 | YDRWTy1-4 | YDRWTy1-5 | YERCTy1-1 | |
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| Other Features | | | | | | | | | | |
| Topics | Genes linked to topics (#11 - 20 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| YERCTy1-2 | YGRCTy1-2 | YGRCTy1-3 | YGRWTy1-1 | YHRCTy1-1 | YJRWTy1-1 | YJRWTy1-2 | YLRCTy1-1 | YLRWTy1-2 | YLRWTy1-3 | |
| Additional Literature | | | | | | | | | | |
| Other Features | | | | | | | | | | |
| Topics | Genes linked to topics (#21 - 30 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| YMLWTy1-1 | YMLWTy1-2 | YMRCTy1-3 | YMRCTy1-4 | YNLCTy1-1 | YNLWTy1-2 | YOLWTy1-1 | YORWTy1-2 | YPLWTy1-1 | YPRCTy1-2 | |
| Additional Literature | | | | | | | | | | |
| Other Features | | | | | | | | | | |
- To find other papers on a gene and topic, click on the colored ball in the appropriate box.
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The topic is addressed in these papers but does not describe a specific gene or chromosomal feature.
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