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Tanaka F, et al.  (2006) Functional genomic analysis of commercial baker's yeast during initial stages of model dough-fermentation. Food Microbiol 23(8):717-28

Abstract: Gene expression profiles of baker's yeast during initial dough-fermentation were investigated using liquid fermentation (LF) media to obtain insights at the molecular level into rapid adaptation mechanisms of baker's yeast. Results showed that onset of fermentation caused drastic changes in gene expression profiles within 15 min. Genes involved in the tricarboxylic acid (TCA) cycle were down-regulated and genes involved in glycolysis were up-regulated, indicating a metabolic shift from respiration to fermentation. Genes involved in ethanol production (PDC genes and ADH1), in glycerol synthesis (GPD1 and HOR2), and in low-affinity hexose transporters (HXT1 and HXT3) were up-regulated at the beginning of model dough-fermentation. Among genes up-regulated at 15 min, several genes classified as transcription were down-regulated within 30 min. These down-regulated genes are involved in messenger RNA splicing and ribosomal protein biogenesis and in transcriptional regulator (SRB8, MIG1). In contrast, genes involved in amino acid metabolism and in vitamin metabolism, such as arginine biosynthesis, riboflavin biosynthesis, and thiamin biosynthesis, were subsequently up-regulated after 30 min. Interestingly, the genes involved in the unfolded protein response (UPR) pathway were also subsequently up-regulated. Our study presents the first overall description of the transcriptional response of baker's yeast during dough-fermentation, and will thus help clarify genomic responses to various stresses during commercial fermentation processes.

Status: Published Type: Journal Article PubMed ID: 16943074

Topics addressed in this paper

Number of different genes curated to this paper: 223

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Topics Topics not linked to Genes Genes linked to topics (#1 - 10 )
ACE2 ACO1 ACS1 ACS2 ACT1 ADH1 ADH2 ADH5 ADK1 ALD2
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Genomic expression study yg ball
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Topics Genes linked to topics (#11 - 20 )
ALG8 ARG1 ARG3 ARG4 ASR1 ATH1 AVO1 AVT1 BCK1 BGL2
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Topics Genes linked to topics (#21 - 30 )
BUD21 CAM1 CBR1 CDC42 CIS3 CIT1 CLN3 CPA2 CPT1 CWP2
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Topics Genes linked to topics (#31 - 40 )
DAK1 DAL3 DAL5 DLD1 ECM14 EFB1 EMP24 ENO1 ENO2 ERG10
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Topics Genes linked to topics (#41 - 50 )
ERG3 ERV25 ERV41 FBA1 FBP1 FHL1 FLC1 FOL2 FRD1 FUM1
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Topics Genes linked to topics (#51 - 60 )
GAP1 GCV1 GCV2 GCV3 GCY1 GDH1 GGC1 GLC3 GLG1 GLG2
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Topics Genes linked to topics (#61 - 70 )
GLK1 GLN1 GPD1 GPH1 GPM1 GRE2 GSY1 GSY2 GUS1 HAC1
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Topics Genes linked to topics (#71 - 80 )
HCR1 HEM1 HHT1 HIS5 HIS7 HMO1 HOM6 HOR2 HRR25 HSP150
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Topics Genes linked to topics (#81 - 90 )
HXK1 HXK2 HXT1 HXT3 ICY2 IDH1 IDH2 ILV6 IRC23 ISU1
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Topics Genes linked to topics (#91 - 100 )
ITC1 IZH1 IZH2 KAP95 KGD1 KGD2 KRE9 LAT1 LPD1 LSC2
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Topics Genes linked to topics (#101 - 110 )
LSM3 LYS1 MCH1 MCH4 MDH1 MEP2 MET32 MHT1 MIC17 MIG1
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Topics Genes linked to topics (#111 - 120 )
NCP1 NFS1 NOP53 NTH1 NTH2 OLE1 ORC4 ORM1 OST1 PCK1
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Topics Genes linked to topics (#121 - 130 )
PDA1 PDB1 PDC1 PDC5 PDC6 PDX1 PFK1 PFK2 PGI1 PGK1
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Topics Genes linked to topics (#131 - 140 )
PHO8 PRO2 PRP28 PSA1 PYC1 PYC2 PYK2 RAD16 RAD2 RCF2
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Topics Genes linked to topics (#141 - 150 )
REV1 RIB3 RPE1 RPL10 RPS22B RRG7 SCS7 SDH1 SDH2 SDH3
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Topics Genes linked to topics (#151 - 160 )
SDH4 SDT1 SEC61 SEC62 SER1 SHR3 SLX9 SMB1 SML1 SNA3
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Topics Genes linked to topics (#161 - 170 )
SNQ2 SRB8 SSA2 SSU1 STP3 STP4 TBS1 TDA6 TDH1 TDH2
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TDH3 TEF1 THI11 THI4 THI6 THI72 TIR3 TPC1 TPI1 TPO1
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TPO2 TPS1 TPS2 TPS3 TSL1 VMA11 VMA3 VMA4 VTC2 VTC4
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Topics Genes linked to topics (#191 - 200 )
WSS1 YBT1 YCL049C YCR016W YDL187C YDR034W-B YDR090C YDR433W YDR524C-A YHB1
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YHM2 YIA6 YIR035C YJR111C YKE4 YKL033W-A YLL066C YLR287C YMC1 YML096W
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Topics Genes linked to topics (#211 - 220 )
YMR122W-A YMR295C YMR321C YNL234W YNR029C YOR062C YPL199C YPL264C YPR076W YPR1
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Topics Genes linked to topics (#221 - 223 )
YPT1 ZRT1 ZRT3
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