Tu BP, et al. (2005) Logic of the yeast metabolic cycle: temporal compartmentalization of cellular processes. Science 310(5751):1152-8
Abstract: Budding yeast grown under continuous, nutrient-limited conditions exhibit robust, highly periodic cycles in the form of respiratory bursts. Microarray studies reveal that over half of the yeast genome is expressed periodically during these metabolic cycles. Genes encoding proteins having a common function exhibit similar temporal expression patterns, and genes specifying functions associated with energy and metabolism tend to be expressed with exceptionally robust periodicity. Essential cellular and metabolic events occur in synchrony with the metabolic cycle, demonstrating that key processes in a simple eukaryotic cell are compartmentalized in time. Thus, we describe an ultradian metabolic cycle that is fundamentally important to the life of a cell.
| Status: Published | Type: Journal Article | PubMed ID: 16254148 |
Topics addressed in this paper
Number of different genes curated to this paper: 133
- To find other papers on a gene and topic, click on the colored ball in the appropriate box.
- displays other papers with information about that topic for that gene.
- displays other papers in SGD that are associated with that topic.
The topic is addressed in these papers but does not describe a specific gene or chromosomal feature.
- To go to the Locus page for a gene, click on the gene name.
| Topics | Topics not linked to Genes | Genes linked to topics (#1 - 10 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| ACS1 | ADH1 | ADH2 | ALD2 | ARO10 | ARO9 | ASC1 | ATH1 | ATO3 | BCS1 | ||
| Additional Literature | | | | | | | | | | | |
| DNA/RNA Sequence Features | | | | | |||||||
| Genomic expression study |
| ||||||||||
| Omics |
| ||||||||||
| Regulation of | | | | | | | | | | | |
| RNA Levels and Processing | | | | | | | | | | | |
| Topics | Genes linked to topics (#11 - 20 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CAT2 | CBP3 | CDC45 | CIT3 | CLN2 | COX10 | CRC1 | CTA1 | CTF18 | CYS3 | |
| Additional Literature | | | | | | | | | | |
| Cell Cycle Phase Involved | | | | |||||||
| DNA/RNA Sequence Features | | | ||||||||
| Regulation of | | | | | | | | | | |
| RNA Levels and Processing | | | | | | | | | | |
| Topics | Genes linked to topics (#21 - 30 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| DBR1 | ECI1 | FAA2 | FAT3 | FIT2 | FMP30 | FOX2 | GCG1 | GIN4 | GLK1 | |
| Additional Literature | | | | | | | | | | |
| Cell Cycle Phase Involved | | |||||||||
| DNA/RNA Sequence Features | | | | | | |||||
| Primary Literature | | |||||||||
| Regulation of | | | | | | | | | | |
| RNA Levels and Processing | | | | | | | | | | |
- To find other papers on a gene and topic, click on the colored ball in the appropriate box.
- displays other papers with information about that topic for that gene.
- displays other papers in SGD that are associated with that topic.
The topic is addressed in these papers but does not describe a specific gene or chromosomal feature.
- To go to the Locus page for a gene, click on the gene name.
| Topics | Genes linked to topics (#31 - 40 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| GND2 | GPH1 | HXK1 | ICL2 | IDP3 | IMG1 | IMG2 | IRC8 | ISM1 | MAM33 | |
| Additional Literature | | | | | | | | | | |
| DNA/RNA Sequence Features | | | ||||||||
| Regulation of | | | | | | | | | | |
| RNA Levels and Processing | | | | | | | | | | |
| Topics | Genes linked to topics (#41 - 50 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| MCD4 | MDH2 | MEF1 | MHR1 | MNP1 | MRP13 | MRP17 | MRP2 | MRP4 | MRP49 | |
| Additional Literature | | | | | | | | | | |
| Cell Cycle Phase Involved | | |||||||||
| DNA/RNA Sequence Features | | | | | | | | |||
| Regulation of | | | | | | | | | | |
| RNA Levels and Processing | | | | | | | | | | |
| Topics | Genes linked to topics (#51 - 60 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| MRPL1 | MRPL10 | MRPL11 | MRPL13 | MRPL15 | MRPL16 | MRPL17 | MRPL19 | MRPL23 | MRPL24 | |
| Additional Literature | | | | | | | | | | |
| DNA/RNA Sequence Features | | | | | | | ||||
| Regulation of | | | | | | | | | | |
| RNA Levels and Processing | | | | | | | | | | |
- To find other papers on a gene and topic, click on the colored ball in the appropriate box.
- displays other papers with information about that topic for that gene.
- displays other papers in SGD that are associated with that topic.
The topic is addressed in these papers but does not describe a specific gene or chromosomal feature.
- To go to the Locus page for a gene, click on the gene name.
| Topics | Genes linked to topics (#61 - 70 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| MRPL31 | MRPL32 | MRPL35 | MRPL36 | MRPL37 | MRPL39 | MRPL4 | MRPL40 | MRPL7 | MRPL8 | |
| Additional Literature | | | | | | | | | | |
| DNA/RNA Sequence Features | | | | | | | | | ||
| Regulation of | | | | | | | | | | |
| RNA Levels and Processing | | | | | | | | | | |
| Topics | Genes linked to topics (#71 - 80 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| MRPS8 | MSD1 | MSE1 | MSS116 | MSW1 | MTO1 | MZM1 | NTH1 | NTH2 | PCL1 | |
| Additional Literature | | | | | | | | | | |
| Cell Cycle Phase Involved | | |||||||||
| DNA/RNA Sequence Features | | |||||||||
| Regulation of | | | | | | | | | | |
| RNA Levels and Processing | | | | | | | | | | |
| Topics | Genes linked to topics (#81 - 90 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PDA1 | PDB1 | PDX1 | PET117 | PFK1 | POL1 | POT1 | POX1 | PRY2 | PXA1 | |
| Additional Literature | | | | | | | | | | |
| Cell Cycle Phase Involved | | | ||||||||
| DNA/RNA Sequence Features | | | | |||||||
| Regulation of | | | | | | | | | | |
| RNA Levels and Processing | | | | | | | | | | |
- To find other papers on a gene and topic, click on the colored ball in the appropriate box.
- displays other papers with information about that topic for that gene.
- displays other papers in SGD that are associated with that topic.
The topic is addressed in these papers but does not describe a specific gene or chromosomal feature.
- To go to the Locus page for a gene, click on the gene name.
| Topics | Genes linked to topics (#91 - 100 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PXA2 | RGI2 | RML2 | RNR1 | RPL13A | RPL17A | RPL17B | RPL34A | RPL36A | RPL6B | |
| Additional Literature | | | | | | | | | | |
| Cell Cycle Phase Involved | | |||||||||
| DNA/RNA Sequence Features | | | | |||||||
| Regulation of | | | | | | | | | | |
| RNA Levels and Processing | | | | | | | | | | |
| Topics | Genes linked to topics (#101 - 110 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| RPS0B | RPS16B | RPS1A | RPS26B | RPS28B | RPS7B | RSM19 | RSM23 | RSM25 | RSM27 | |
| Additional Literature | | | | | | | | | | |
| DNA/RNA Sequence Features | | | | |||||||
| Regulation of | | | | | | | | | | |
| RNA Levels and Processing | | | | | | | | | | |
| Topics | Genes linked to topics (#111 - 120 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| RSM7 | SCW10 | SEN34 | SRL1 | SSB2 | SUE1 | SWE1 | TKL2 | TOS4 | TOS6 | |
| Additional Literature | | | | | | | | | ||
| Cell Cycle Phase Involved | | | | | ||||||
| DNA/RNA Sequence Features | | | ||||||||
| Primary Literature | | | ||||||||
| Regulation of | | | | | | | | | | |
| RNA Levels and Processing | | | | | | | | | | |
| Topics | Genes linked to topics (#121 - 130 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| TPO4 | VPH1 | YAP1 | YCR062W | YDR115W | YEL057C | YFL052W | YJL213W | YLR253W | YML6 | |
| Additional Literature | | | | | | | | | ||
| Cellular Location | | | ||||||||
| DNA/RNA Sequence Features | | | | |||||||
| Primary Literature | | | ||||||||
| Regulation of | | | | | | | | | ||
| RNA Levels and Processing | | | | | | | | | ||
| Topics | Genes linked to topics (#131 - 133 ) | ||
|---|---|---|---|
| YMR144W | YOR309C | YOX1 | |
| Additional Literature | | | |
| Cell Cycle Phase Involved | | | |
| Regulation of | | | |
| RNA Levels and Processing | | | |





