SGD Paper Help


Page Contents:
Lesage P and Todeschini AL  (2005) Happy together: the life and times of Ty retrotransposons and their hosts. Cytogenet Genome Res 110(1-4):70-90

Abstract: The aim of this review is to describe the level of intimacy between Ty retrotransposons (Ty1-Ty5) and their host the yeast Saccharomyces cerevisiae. The effects of Ty location in the genome and of host proteins on the expression and mobility of Ty elements are highlighted. After a brief overview of Ty diversity and evolution, we describe the factors that dictate Ty target-site preference and the impact of targeting on Ty and adjacent gene expression. Studies on Ty3 and Ty5 have been especially informative in unraveling the role of host factors (Pol III machinery and silencing proteins, respectively) and integrase in controlling the specificity of integration. In contrast, not much is known regarding Ty1, Ty2 and Ty4, except that their insertion depends on the transcriptional competence of the adjacent Pol III gene and might be influenced by some chromatin components. This review also brings together recent findings on the regulation of Ty1 retrotransposition. A large number of host proteins (over 30) involved in a wide range of cellular processes controls either directly or indirectly Ty1 mobility, primarily at post-transcriptional steps. We focus on several genes for which more detailed analyses have permitted the elaboration of regulatory models. In addition, this review describes new data revealing that repression of Ty1 mobility also involves two forms of copy number control that act at both the trancriptional and post-transcriptional levels. Since S. cerevisiae lacks the conserved pathways for copy number control via transcriptional and post-transcriptional gene silencing found in other eukaryotes, Ty1 copy number control must be via another mechanism whose features are outlined. Ty1 response to stress also implicates activation at both transcriptional and postranscriptional steps of Ty1. Finally, we provide several insights in the role of Ty elements in chromosome evolution and yeast adaptation and discuss the factors that might limit Ty ectopic recombination.

Status: Published Type: Journal Article PubMed ID: 16093660

Topics addressed in this paper

Number of different genes curated to this paper: 523

Jump to Summary Chart for:
  • To find other papers on a gene and topic, click on the colored ball in the appropriate box.
  • displays other papers with information about that topic for that gene.
  • displays other papers in SGD that are associated with that topic.
    The topic is addressed in these papers but does not describe a specific gene or chromosomal feature.
  • To go to the Locus page for a gene, click on the gene name.
Topics Genes linked to topics (#1 - 10 )
YALCdelta2 YALWdelta1 YAR009C YAR010C YARCdelta3 YARCdelta4 YARCdelta5 YARCdelta8 YARCTy1-1 YARWdelta6
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Reviews blue ball

Topics Genes linked to topics (#11 - 20 )
YARWdelta7 YARWsigma1 YBL005W-A YBL005W-B YBL100W-A YBL100W-B YBLCdelta7 YBLCtau1 YBLWdelta1 YBLWdelta10
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#21 - 30 )
YBLWdelta2 YBLWdelta3 YBLWdelta4 YBLWdelta5 YBLWdelta6 YBLWdelta8 YBLWdelta9 YBLWsigma1 YBLWTy1-1 YBLWTy2-1
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Reviews blue ball blue ball
Jump to Summary Chart for:
  • To find other papers on a gene and topic, click on the colored ball in the appropriate box.
  • displays other papers with information about that topic for that gene.
  • displays other papers in SGD that are associated with that topic.
    The topic is addressed in these papers but does not describe a specific gene or chromosomal feature.
  • To go to the Locus page for a gene, click on the gene name.

Topics Genes linked to topics (#31 - 40 )
YBR012W-A YBR012W-B YBRCdelta11 YBRCdelta14 YBRCdelta19 YBRCtau2 YBRWdelta12 YBRWdelta13 YBRWdelta15 YBRWdelta16
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#41 - 50 )
YBRWdelta17 YBRWdelta18 YBRWTy1-2 YCL019W YCL020W YCLCdelta1 YCLWdelta2a YCLWdelta2b YCLWdelta3 YCLWdelta4
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Reviews blue ball

Topics Genes linked to topics (#51 - 60 )
YCLWdelta5 YCLWomega1 YCLWomega2 YCLWTy2-1 YCLWTy5-1 YCRCdelta14 YCRCdelta6 YCRCdelta7 YCRCtau1 YCRWdelta10
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Reviews blue ball blue ball
Jump to Summary Chart for:
  • To find other papers on a gene and topic, click on the colored ball in the appropriate box.
  • displays other papers with information about that topic for that gene.
  • displays other papers in SGD that are associated with that topic.
    The topic is addressed in these papers but does not describe a specific gene or chromosomal feature.
  • To go to the Locus page for a gene, click on the gene name.

Topics Genes linked to topics (#61 - 70 )
YCRWdelta11 YCRWdelta12 YCRWdelta13 YCRWdelta8 YCRWdelta9 YCRWomega3 YDLCdelta1 YDLWtau1 YDR034C-C YDR034C-D
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#71 - 80 )
YDR098C-A YDR098C-B YDR170W-A YDR210C-C YDR210C-D YDR210W-A YDR210W-B YDR261C-C YDR261C-D YDR261W-A
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#81 - 90 )
YDR261W-B YDR316W-A YDR316W-B YDR365W-A YDR365W-B YDRCdelta2 YDRCdelta21 YDRCdelta22 YDRCdelta3 YDRCdelta4
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Jump to Summary Chart for:
  • To find other papers on a gene and topic, click on the colored ball in the appropriate box.
  • displays other papers with information about that topic for that gene.
  • displays other papers in SGD that are associated with that topic.
    The topic is addressed in these papers but does not describe a specific gene or chromosomal feature.
  • To go to the Locus page for a gene, click on the gene name.

Topics Genes linked to topics (#91 - 100 )
YDRCdelta5 YDRCdelta6a YDRCdelta6b YDRCdelta7 YDRCdelta8 YDRCdelta9 YDRCsigma1 YDRCsigma3 YDRCsigma4 YDRCsigma6
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#101 - 110 )
YDRCTy1-1 YDRCTy1-2 YDRCTy1-3 YDRCTy2-1 YDRWdelta10 YDRWdelta11 YDRWdelta12 YDRWdelta13 YDRWdelta14 YDRWdelta19
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball
Reviews blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#111 - 120 )
YDRWdelta20 YDRWdelta23 YDRWdelta24 YDRWdelta25 YDRWdelta26 YDRWdelta27 YDRWdelta28 YDRWdelta29 YDRWdelta30 YDRWdelta31
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#121 - 130 )
YDRWdelta7 YDRWsigma2 YDRWsigma5 YDRWTy1-4 YDRWTy1-5 YDRWTy2-2 YDRWTy2-3 YELCdelta3 YELCdelta4 YELCtau1
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball
Reviews blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#131 - 140 )
YELWdelta1 YELWdelta2 YELWdelta5 YELWdelta6 YER137C-A YER138C YER159C-A YER160C YERCdelta10 YERCdelta14
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#141 - 150 )
YERCdelta15 YERCdelta16 YERCdelta19 YERCdelta20 YERCdelta23 YERCdelta24 YERCdelta26 YERCdelta8 YERComega1 YERCsigma1
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#151 - 160 )
YERCsigma2 YERCsigma3 YERCsigma4 YERCtau2 YERCtau3 YERCTy1-1 YERCTy1-2 YERWdelta11 YERWdelta12 YERWdelta13
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Reviews blue ball blue ball

Topics Genes linked to topics (#161 - 170 )
YERWdelta17 YERWdelta21 YERWdelta22 YERWdelta25 YERWdelta7 YERWdelta9 YERWomega2 YFL002W-A YFL002W-B YFLCdelta6
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#171 - 180 )
YFLWdelta1 YFLWdelta2 YFLWdelta3 YFLWdelta4 YFLWdelta5 YFLWtau1 YFLWTy2-1 YFRCdelta8 YFRCdelta9 YFRWdelta10
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Reviews blue ball

Topics Genes linked to topics (#181 - 190 )
YFRWdelta7 YGLCdelta1 YGLCdelta5 YGLCsigma1 YGLCsigma3 YGLCtau3 YGLWdelta10 YGLWdelta2 YGLWdelta3 YGLWdelta4
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#191 - 200 )
YGLWdelta6 YGLWdelta7 YGLWdelta8 YGLWdelta9 YGLWomega1 YGLWsigma2 YGLWtau1 YGLWtau2 YGR027W-A YGR027W-B
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#201 - 210 )
YGR038C-A YGR038C-B YGR109W-A YGR109W-B YGR161C-C YGR161C-D YGR161W-A YGR161W-B YGRCdelta12 YGRCdelta15
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#211 - 220 )
YGRCdelta16 YGRCdelta17 YGRCdelta18 YGRCdelta20 YGRCdelta25 YGRCdelta29 YGRCdelta30 YGRCtau3 YGRCTy1-2 YGRCTy1-3
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Reviews blue ball blue ball

Topics Genes linked to topics (#221 - 230 )
YGRCTy2-1 YGRWdelta11 YGRWdelta13 YGRWdelta14 YGRWdelta19 YGRWdelta21 YGRWdelta22 YGRWdelta23 YGRWdelta24 YGRWdelta26
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Reviews blue ball

Topics Genes linked to topics (#231 - 240 )
YGRWdelta27 YGRWdelta28 YGRWdelta31 YGRWdelta32 YGRWsigma4 YGRWsigma5 YGRWsigma6 YGRWsigma7 YGRWTy1-1 YGRWTy2-2
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Reviews blue ball blue ball

Topics Genes linked to topics (#241 - 250 )
YGRWTy3-1 YHL009W-A YHL009W-B YHLCdelta1 YHLComega1 YHLCsigma1 YHLWdelta2 YHLWtau1 YHLWtau2 YHLWTy4-1
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Reviews blue ball blue ball

Topics Genes linked to topics (#251 - 260 )
YHR214C-B YHR214C-C YHRCdelta10 YHRCdelta11 YHRCdelta12 YHRCdelta14 YHRCdelta15 YHRCdelta16 YHRCdelta3 YHRCdelta4
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#261 - 270 )
YHRCdelta5 YHRCdelta6 YHRCdelta8 YHRCsigma2 YHRCsigma3 YHRCtau4 YHRCTy1-1 YHRWdelta13 YHRWdelta7 YHRWdelta9
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Reviews blue ball

Topics Genes linked to topics (#271 - 280 )
YHRWtau3 YIL082W YIL082W-A YILCdelta1 YILCdelta3 YILCdelta5 YILCtau1 YILWdelta2 YILWdelta4 YILWsigma1
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#281 - 290 )
YILWsigma2 YILWsigma3 YILWTy3-1 YIRCdelta6 YJL113W YJL114W YJLCdelta3 YJLCdelta4 YJLCdelta5 YJLCdelta6
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Reviews blue ball

Topics Genes linked to topics (#291 - 300 )
YJLCdelta7 YJLWdelta1 YJLWdelta10 YJLWdelta8 YJLWdelta9 YJLWsigma1 YJLWtau1 YJLWtau2 YJLWtau3 YJLWtau4
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#301 - 310 )
YJLWTy4-1 YJR026W YJR027W YJR028W YJR029W YJRCdelta15 YJRCdelta16 YJRCdelta19 YJRWdelta11 YJRWdelta12
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Reviews blue ball

Topics Genes linked to topics (#311 - 320 )
YJRWdelta13 YJRWdelta14 YJRWdelta17 YJRWdelta18 YJRWdelta20 YJRWTy1-1 YJRWTy1-2 YKLCdelta2 YKLCdelta4 YKLCdelta5
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Reviews blue ball blue ball

Topics Genes linked to topics (#321 - 330 )
YKLCdelta6 YKLCsigma1 YKLWdelta1 YKLWdelta3 YKLWdelta7 YKRCdelta11 YKRCdelta12 YKRCdelta8 YKRCdelta9 YKRWdelta10
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#331 - 340 )
YKRWomega1 YLLCdelta1 YLR035C-A YLR157C-A YLR157C-B YLR227W-A YLR227W-B YLR256W-A YLR410W-A YLR410W-B
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#341 - 350 )
YLRCdelta16 YLRCdelta18 YLRCdelta19 YLRCdelta2 YLRCdelta21 YLRCdelta25 YLRCdelta26 YLRCdelta27 YLRCdelta3 YLRCdelta5
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#351 - 360 )
YLRCdelta7 YLRCdelta8 YLRCdelta9 YLRCsigma1 YLRCtau1 YLRCTy1-1 YLRCTy2-2 YLRWdelta10 YLRWdelta11 YLRWdelta12
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Reviews blue ball blue ball

Topics Genes linked to topics (#361 - 370 )
YLRWdelta13 YLRWdelta14 YLRWdelta15 YLRWdelta17 YLRWdelta20 YLRWdelta22 YLRWdelta23 YLRWdelta24 YLRWdelta4 YLRWdelta6
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#371 - 380 )
YLRWsigma2 YLRWsigma3 YLRWsigma4 YLRWTy1-2 YLRWTy1-3 YLRWTy2-1 YML039W YML040W YML045W YML045W-A
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Reviews blue ball blue ball blue ball

Topics Genes linked to topics (#381 - 390 )
YMLCdelta1 YMLCdelta2 YMLWdelta3 YMLWdelta4 YMLWdelta5 YMLWdelta6 YMLWTy1-1 YMLWTy1-2 YMR045C YMR046C
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Reviews blue ball blue ball

Topics Genes linked to topics (#391 - 400 )
YMR050C YMR051C YMRCdelta10 YMRCdelta11 YMRCdelta13 YMRCdelta14 YMRCdelta18 YMRCdelta7 YMRCdelta8 YMRCdelta9
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#401 - 410 )
YMRCtau1 YMRCtau3 YMRCTy1-3 YMRCTy1-4 YMRWdelta12 YMRWdelta15 YMRWdelta16 YMRWdelta17 YMRWdelta19 YMRWdelta20
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Reviews blue ball blue ball

Topics Genes linked to topics (#411 - 420 )
YMRWdelta21 YMRWtau2 YNL054W-A YNL284C-A YNL284C-B YNLCdelta1 YNLCdelta2 YNLCdelta5 YNLCdelta6 YNLCsigma1
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#421 - 430 )
YNLCTy1-1 YNLCTy2-1 YNLWdelta3 YNLWdelta4 YNLWsigma2 YNLWsigma3 YNLWtau1 YNLWtau2 YNLWTy1-2 YNRCdelta7
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Reviews blue ball blue ball blue ball

Topics Genes linked to topics (#431 - 440 )
YNRCdelta8 YNRCdelta9 YNRCtau3 YNRWsigma4 YOL103W-A YOL103W-B YOLCdelta1 YOLCdelta2 YOLCdelta3 YOLCdelta7
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#441 - 450 )
YOLCdelta8 YOLWdelta4 YOLWdelta5 YOLWdelta6 YOLWsigma1 YOLWtau1 YOLWTy1-1 YOR142W-A YOR142W-B YOR192C-A
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Reviews blue ball

Topics Genes linked to topics (#451 - 460 )
YOR192C-B YOR343W-A YOR343W-B YORCdelta11 YORCdelta15 YORCdelta18 YORCdelta20 YORCdelta21 YORCdelta25 YORCdelta9
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#461 - 470 )
YORCTy2-1 YORWdelta10 YORWdelta12 YORWdelta13 YORWdelta14 YORWdelta16 YORWdelta17 YORWdelta19 YORWdelta22 YORWdelta23
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Reviews blue ball

Topics Genes linked to topics (#471 - 480 )
YORWdelta24 YORWsigma2 YORWsigma3 YORWsigma4 YORWtau2 YORWtau3 YORWTy1-2 YORWTy2-2 YPL257W-A YPL257W-B
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Reviews blue ball blue ball

Topics Genes linked to topics (#481 - 490 )
YPLCdelta1 YPLCdelta10 YPLCtau1 YPLCtau2 YPLCTy4-1 YPLWdelta11 YPLWdelta2 YPLWdelta3 YPLWdelta4 YPLWdelta5
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Reviews blue ball

Topics Genes linked to topics (#491 - 500 )
YPLWdelta6 YPLWdelta7 YPLWdelta8 YPLWdelta9 YPLWsigma1 YPLWTy1-1 YPR137C-A YPR137C-B YPR158C-C YPR158C-D
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Reviews blue ball

Topics Genes linked to topics (#501 - 510 )
YPR158W-A YPR158W-B YPRCdelta13 YPRCdelta15 YPRCdelta18 YPRCdelta19 YPRCdelta22 YPRCdelta23 YPRCdelta24 YPRCtau3
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#511 - 520 )
YPRCTy1-2 YPRCTy1-4 YPRWdelta12 YPRWdelta14 YPRWdelta16 YPRWdelta17 YPRWdelta20 YPRWdelta21 YPRWsigma2 YPRWsigma3
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Reviews blue ball blue ball

Topics Genes linked to topics (#521 - 523 )
YPRWsigma4 YPRWtau4 YPRWTy1-3
Primary Literature blue ball blue ball
Reviews blue ball

Author Searches

To find contact information or other publications by the authors of this paper, follow these three steps:
  1. (1) Choose an author,
  2. (2) Choose a search parameter,
  3. (3) Click to implement
Page Contents: