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Reed SH  (2005) Nucleotide excision repair in chromatin: the shape of things to come. DNA Repair (Amst) 4(8):909-18

Abstract: Much of our mechanistic understanding of nucleotide excision repair (NER) has been derived from biochemical studies that have analysed the reaction as it occurs on DNA substrates that are not representative of DNA as it exists in the living cell. These studies have been extremely useful in deciphering the core mechanism of the NER reaction, but efforts to understand how NER operates in chromatin have been hampered in part because assembling DNA into nucleosomes, the first level of chromatin compaction, is inhibitory to NER in vitro. However, recent research using biochemical, genetic and cell-based studies is now providing us with the first insights into the molecular mechanism of NER as it occurs in the cellular context. A number of recent studies have provided glimpses of a chromatin--NER connection. Here I review this literature and evaluate how it might aid our understanding, and shape our future research into NER.

Status: Published Type: Journal Article | Review PubMed ID: 15905137

Topics addressed in this paper

Number of different genes curated to this paper: 61

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Topics Genes linked to topics (#1 - 10 )
ABF1 BLM10 CIC1 DOA4 ECM29 ELC1 HUL5 NAS6 PRE1 PRE10
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Topics Genes linked to topics (#11 - 20 )
PRE2 PRE3 PRE4 PRE5 PRE6 PRE7 PRE8 PRE9 PUP1 PUP2
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Topics Genes linked to topics (#21 - 30 )
PUP3 RAD16 RAD23 RAD26 RAD3 RAD4 RAD6 RAD7 RPN1 RPN10
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Topics Genes linked to topics (#31 - 40 )
RPN11 RPN12 RPN13 RPN14 RPN2 RPN3 RPN5 RPN6 RPN7 RPN8
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Topics Genes linked to topics (#41 - 50 )
RPN9 RPT1 RPT2 RPT3 RPT4 RPT5 RPT6 SCL1 SEM1 SNF2
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Topics Genes linked to topics (#51 - 60 )
SSL1 SSL2 TFB1 TFB2 TFB4 TFB5 UBC1 UBC4 UBC5 UBP6
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Topics Genes linked to topics (#61 )
UMP1
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