SGD Paper 
Noble CG, et al. (2005) Key features of the interaction between Pcf11 CID and RNA polymerase II CTD. Nat Struct Mol Biol 12(2):144-51
Abstract: The C-terminal domain (CTD) of the large subunit of RNA polymerase II is a platform for mRNA processing factors and links gene transcription to mRNA capping, splicing and polyadenylation. Pcf11, an essential component of the mRNA cleavage factor IA, contains a CTD-interaction domain that binds in a phospho-dependent manner to the heptad repeats within the RNA polymerase II CTD. We show here that the phosphorylated CTD exists as a dynamic disordered ensemble in solution and, by induced fit, it assumes a structured conformation when bound to Pcf11. In addition, we detected cis-trans populations for the CTD prolines, and found that only the all-trans form is selected for binding. These data suggest that the recognition of the CTD is regulated by independent site-specific modifications (phosphorylation and proline cis-trans isomerization) and, probably, by the local concentration of suitable binding sites.
| Status: Published | Type: Journal Article | PubMed ID: 15665873 |
Topics addressed in this paper
Number of different genes curated to this paper: 2
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