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Pandey M, et al.  (2004) Insights into the role of an active site aspartate in Ty1 reverse transcriptase polymerization. J Biol Chem 279(46):47840-8

Abstract: Long terminal repeat-containing retrotransposons encode reverse transcriptases (RTs) that replicate their RNA into integratable, double-stranded DNA. A mutant version of the RT from Saccharomyces cerevisiae retrotransposon Ty1, in which one of the three active site aspartates has been changed to asparagine (D211N), is still capable of in vitro polymerization, although it is blocked for in vivo transposition. We generated recombinant WT and D211N Ty1 RTs to study RT function and determine specific roles for the Asp(211) residue. Presteady-state kinetic analysis of the two enzymes shows that the D211N mutation has minimal effect on nucleotide binding but reduces the k(pol) by approximately 230-fold. The mutation reduces binding affinity for both Mn(2+) and Mg(2+), indicating that the Asp(211) side chain helps create a tight metal binding pocket. Although both enzymes are highly processive and tend to remain bound to their initial substrate, each shows distinctive patterns of pausing, attributable to interactions between metal ions and the active site residue. These results provide insights to specific roles for the Asp(211) residue during polymerization and indicate unusual enzymatic properties that bear on the Ty1 replication pathway.

Status: Published Type: Journal Article PubMed ID: 15333632

Topics addressed in this paper

Number of different genes curated to this paper: 30

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Topics Genes linked to topics (#1 - 10 )
YAR009C YBL005W-B YBR012W-B YDR098C-B YDR210C-D YDR261C-D YDR316W-B YDR365W-B YER138C YER160C
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Topics Genes linked to topics (#11 - 20 )
YGR027W-B YGR038C-B YGR161C-D YHR214C-B YJR027W YJR029W YLR157C-B YLR227W-B YML039W YML045W
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Topics Genes linked to topics (#21 - 30 )
YMR045C YMR050C YNL054W-B YNL284C-B YOL103W-B YOR142W-B YPL257W-B YPR137C-B YPR158C-D YPR158W-B
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