SSH1/YBR283C Protein Information Help

SSH1 BASIC PROTEIN INFORMATION

Standard Name Ssh1p
Systematic Name Ybr283cp
ORF Classification Verified
Description Subunit of the Ssh1 translocon complex; Sec61p homolog involved in co-translational pathway of protein translocation; not essential ( 1, 2 )
Name Description Sec Sixty-one Homolog 1
Experimental Data
Molecules/cell 704 3
Predicted Sequence Formatted Sequence or sequence in FASTA format
Length (a.a.) 490
Molecular Weight (Da) 53,311
Isoelectric Point (pI) 8.18

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Domains/motifs See the graphical view and list of proteins that share domains/motifs in common with Ssh1p (InterPro)
Transmembrane Domains There are 9 total predicted transmembrane domains (TMHMM)
Physical Interactions There are 43 total curated physical interactions (BioGRID)
Homologs PDB Homologs | BLASTP | PSI-BLAST | BLASTP v. fungi | Fungal Alignment | Synteny Viewer
Secondary Structure Prediction GCG:PepPlot | GCG:PepStruct | GCG:Helical Wheel
External Sequence Databases EBI: P38353 | UPI0000135FC5
MIPS: YBR283C
NCBI: NP_009842.1 | 6319760
GenBank/EMBL/DDBJ: AY692997
Amino Acid Sequence (or in FASTA format)
 
       1  MSGFRLIDIV KPILPILPEV ELPFEKLPFD DKIVYTIFAG LIYLFAQFPL
      51  VGLPKATTPN VNDPIYFLRG VFGCEPRTLL EFGLFPNISS GLILQLLAGL
     101  KVIKVNFKIQ SDRELFQSLT KVFAIVQYVI LTNIFIFAGY FGDDLSVVQI
     151  GLINFQLVGA GIFTTLLAEV IDKGFGFSSG AMIINTVVIA TNLVADTFGV
     201  SQIKVGEDDQ TEAQGALINL IQGLRSKHKT FIGGIISAFN RDYLPNLTTT
     251  IIVLAIAIIV CYLQSVRVEL PIRSTRARGT NNVYPIKLLY TGCLSVLFSY
     301  TILFYIHIFA FVLIQLVAKN EPTHIICKIM GHYENANNLL AVPTFPLSLL
     351  APPTSFFKGV TQQPLTFITY SAFILVTGIW FADKWQAISG SSARDVALEF
     401  KDQGITLMGR REQNVAKELN KVIPIAAVTG ASVLSLITVI GESLGLKGKA
     451  AGIVVGIAGG FSLLEVITIE YQQSGGQSAL NQVLGVPGAM *

EXTERNAL LINKS for Ssh1p

Homologs Interaction Resources Protein databases/Other Localization Resources
BLASTP (NCBI) BioGRID SCOP Superfamily Organelle DB (UMich)
Ashbya (AGD) BOND GPMdb (Mass Spec.) YGAC Triples
Candida (CGD) BioPIXIE MIPS
Candida (CandidaDB) CYC2008 (complexes) Pfam domains
YGOB DIP PhosphoPep Database
YOGY
YeastRC Structure Prediction (Seattle)

REFERENCES CITED ON THIS PAGE [View Complete Literature Guide for Ssh1p ]

1) Finke K, et al.  (1996) A second trimeric complex containing homologs of the Sec61p complex functions in protein transport across the ER membrane of S. cerevisiae. EMBO J 15(7):1482-94
2) Robb A and Brown JD  (2001) Protein transport: two translocons are better than one. Mol Cell 8(3):484-6
3) Ghaemmaghami S, et al.  (2003) Global analysis of protein expression in yeast. Nature 425(6959):737-41