Alignment of CAT8/YMR280C and PDB 1D66 (chain A)

This page compares a protein of known structure to the Saccharomyces cerevisiae protein CAT8/YMR280C. The analysis was performed by comparing yeast protein sequences against protein sequences in The RCSB Protein Databank (PDB) using Smith-Waterman analysis program.

Alignment of yeast gene CAT8/YMR280C and PDB protein 1D66 (chain A)	Jump to Structure

Alignment Details

CAT8 length = 1434 aa

Alignment Length = 59 aa (4.1%)

P-value = 5.7e-05

%Identity = 39

%Similar = 29

Alignment Position

Sequence Alignment

CAT8	66	`I`	`A`	`Q`	`A`	`C`	`D`	`R`	`C`	`R`	`S`	`K`	`K`	`T`	`R`	`C`	`D`	`G`	`K`	`R`	`P`	`Q`	`C`	`S`	`Q`	`C`	`A`	`A`	`V`	`G`	`F`	`E`	`C`	`R`	`I`	`S`	`D`	`K`	`L`	`L`	`R`	`K`	`A`	`Y`	`P`	`K`	`G`	`Y`	`T`	`E`	`S`	`L`	`E`	`E`	`R`	`V`	`R`	`E`	`L`	`E`	124
		`:`		`:`	`:`	`:`	`:`		`:`	`:`		`:`	`:`		`.`	`:`	`.`		`.`	`.`	`:`	`.`	`:`	`.`	`.`	`:`				`.`	`.`	`:`	`:`	`:`		`:`		`:`			`:`	`.`				`.`	`.`	`.`				`.`	`:`		`:`	`.`	`.`	`.`	`:`	`:`
1D66_(A)	7	`I`	`E`	`Q`	`A`	`C`	`D`	`I`	`C`	`R`	`L`	`K`	`K`	`L`	`K`	`C`	`S`	`K`	`E`	`K`	`P`	`K`	`C`	`A`	`K`	`C`	`L`	`K`	`N`	`N`	`W`	`E`	`C`	`R`	`Y`	`S`	`P`	`K`	`T`	`K`	`R`	`S`	`P`	`L`	`T`	`R`	`A`	`H`	`L`	`T`	`E`	`V`	`E`	`S`	`R`	`L`	`E`	`R`	`L`	`E`	65

Homolog Structure

Information provided by The RCSB Protein Databank (PDB)		Jump to alignment
PDB protein	1d66 (Chain A) Dna recognition by gal4: structure of a protein/dna complex
	PDB_Info
Homolog Source	Saccharomyces cerevisiae
External Links	SCOP MMDB CATH

Last updated on 2009-11-10

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