Alignment of SEC22/YLR268W and PDB 1IFQ (chain B)

This page compares a protein of known structure to the Saccharomyces cerevisiae protein SEC22/YLR268W. The analysis was performed by comparing yeast protein sequences against protein sequences in The RCSB Protein Databank (PDB) using Smith-Waterman analysis program.

Alignment of yeast gene SEC22/YLR268W and PDB protein 1IFQ (chain B)	Jump to Structure

Alignment Details

SEC22 length = 215 aa

Alignment Length = 120 aa (55.8%)

P-value = 8.4e-15

%Identity = 40

%Similar = 37

Alignment Position

Sequence Alignment

SEC22	5	`T`	`L`	`I`	`Y`	`R`	`-`	`E`	`D`	`G`	`L`	`P`	`L`	`C`	`T`	`S`	`V`	`-`	`-`	`D`	`N`	`E`	`N`	`D`	`P`	`S`	`L`	`F`	`E`	`Q`	`K`	`Q`	`K`	`V`	`K`	`I`	`V`	`V`	`S`	`R`	`L`	`T`	`P`	`Q`	`S`	`A`	`T`	`E`	`A`	`T`	`L`	`E`	`S`	`G`	`S`	`F`	`E`	`I`	`H`	`Y`	`L`	61
		`:`	`.`	`:`		`:`			`:`	`:`	`:`	`:`	`:`		`.`	`:`	`.`			`:`	`.`	`.`	`.`			`.`	`:`		`.`		`.`	`.`	`.`	`.`	`:`		`.`			`.`	`:`	`.`		`:`	`:`		`:`	`.`		`:`	`:`	`:`	`.`	`:`	`.`	`.`		`.`	`:`	`:`	`.`
1IFQ_(B)	16	`T`	`M`	`I`	`A`	`R`	`V`	`A`	`D`	`G`	`L`	`P`	`L`	`A`	`A`	`S`	`M`	`Q`	`E`	`D`	`E`	`Q`	`S`	`G`	`R`	`D`	`L`	`Q`	`Q`	`Y`	`Q`	`S`	`Q`	`A`	`K`	`Q`	`L`	`F`	`R`	`K`	`L`	`N`	`E`	`Q`	`S`	`P`	`T`	`R`	`C`	`T`	`L`	`E`	`A`	`G`	`A`	`M`	`T`	`F`	`H`	`Y`	`I`	75

SEC22	62	`K`	`K`	`S`	`M`	`V`	`Y`	`Y`	`F`	`V`	`I`	`C`	`E`	`S`	`G`	`Y`	`P`	`R`	`N`	`L`	`A`	`F`	`S`	`Y`	`L`	`N`	`D`	`I`	`A`	`Q`	`E`	`F`	`E`	`H`	`S`	`F`	`A`	`N`	`E`	`Y`	`P`	`K`	`P`	`T`	`V`	`R`	`P`	`Y`	`Q`	`F`	`V`	`N`	`F`	`D`	`N`	`F`	`L`	`Q`	`M`	`T`	`K`	121
			`.`	`.`		`:`		`:`	`.`	`:`	`.`	`:`	`:`	`.`	`.`	`.`	`:`	`.`	`.`	`:`	`:`	`:`	`.`	`:`	`:`	`.`	`:`	`.`		`.`	`:`	`:`	`.`	`.`	`.`		`.`	`.`	`.`		`:`			`.`		`:`	`:`	`:`	`.`	`:`	`.`	`.`	`:`	`:`	`.`	`:`	`.`	`:`		`:`	`:`
1IFQ_(B)	76	`I`	`E`	`Q`	`G`	`V`	`C`	`Y`	`L`	`V`	`L`	`C`	`E`	`A`	`A`	`F`	`P`	`K`	`K`	`L`	`A`	`F`	`A`	`Y`	`L`	`E`	`D`	`L`	`H`	`S`	`E`	`F`	`D`	`E`	`Q`	`H`	`G`	`K`	`K`	`V`	`P`	`T`	`V`	`S`	`-`	`R`	`P`	`Y`	`S`	`F`	`I`	`E`	`F`	`D`	`T`	`F`	`I`	`Q`	`K`	`T`	`K`	134

SEC22	122	`K`	`S`	`Y`																																																										124
		`:`		`:`
1IFQ_(B)	135	`K`	`L`	`Y`																																																										137

Homolog Structure

Information provided by The RCSB Protein Databank (PDB)		Jump to alignment
PDB protein	1ifq (Chain B) Sec22b n-terminal domain
	PDB_Info
Homolog Source	Mus musculus
External Links	SCOP MMDB CATH

Last updated on 2009-11-10

Return to SGD

SGD^tm pages Database Copyright © 1997-2010 The Board of Trustees of Leland Stanford Junior University. Permission to use the information contained in this database was given by the researchers/institutes who contributed or published the information. Users of the database are solely responsible for compliance with any copyright restrictions, including those applying to the author abstracts. Documents from this server are provided "AS-IS" without any warranty, expressed or implied. The SGD project at Stanford University is supported by a Genome Research Resource Grant from the US National Human Genome Research Institute, part of the US National Institutes of Health.