SSH1/YBR283C Domains/Motifs and Signal Peptides Help

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Ssh1p domain/motif information see the external links section.

Proteome Browser
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Shared domains/motifs
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This table lists proteins that share domains/motifs in common with those found in Ssh1p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGERFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Ssh1p domain/motif information see the external links section.

Last updated on 2010-11-23

Other Saccharomyces cerevisiae proteins that contain motifs found in Ssh1p
Protein Motifs in common with Ssh1p Other motifs in this protein (but not in Ssh1p )
Sec61p PIR superfamily PIRSF004557: Preprotein translocase Sec, SecY/Sec61-alpha subunit
PANTHER PTHR10906:SF1: PREPROTEIN TRANSLOCASE SECY SUBUNIT (SEC61)
PANTHER PTHR10906: SECY/SEC61-ALPHA FAMILY MEMBER
PROSITE PS00755: SECY_1
SUPERFAMILY SSF103491: Preprotein translocase SecY subunit
Pfam PF10559: Plug_translocon
Pfam PF00344: SecY
 PROSITE PS00756: SECY_2

Unique domains/motifs
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This table lists domains/motifs that are unique to Ssh1p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGERFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Ssh1p domain/motif information see the external links section.

Last updated on 2010-11-23

There are no unique domains/motifs predicted for Ssh1p .

Transmembrane Domains
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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

Predicted Transmembane Domain(s) (Click on image for expanded interactive view) Amino Acid Coordinate(s)
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33 - 52
122 - 141
145 - 167
174 - 196
246 - 268
288 - 310
360 - 382
418 - 440
450 - 469

Signal Peptide(s)
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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Ssh1p .

External Links
Jump to: top | Shared domains | Unique domains | Transmembrane domains | Signal peptide(s)


The following external links can be used to directly search external databases for domain/motif information for Ssh1p .